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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0057700.1

TAAATGTGCCCGACACAGAATTTTGTACACCACCATCGTAAAGCTATCGGCTTTTATATAACTCAAACACAAAAGAGAGAAGACCCAACAACCTGGTCCAAAGAACATGCAACAAAAGAACAAATTTCGCACTCAATGCAGCTTATGGACAAATATCGATCACTCCGCACCTCCTCCACACCCCAGGTCATAGCTTGCTCTGGAATTGATAATTTTCCAAGAAAAAATGTTTGTGTTAATAGCTCTCTGCTGTTTCCTTTCTTTCTAAAATTTGTGAGCTTCACGACTGGAGTAGAACATTCAAGGAAACAATATGTGTTCTCTAGAGAAAAGTTCCCATGATAATACCCGTTGAGAAACAGCTGTTCCATCCCGTCAAATATTCCTCTCAAAACCATCTGGAGATGGGGTGACGGAAGTAAGAGAGTTGCACCAACGGGGGCATGAAACCGAGCTGTTGACAGGAGCAATTGCACATATTCTGATAACACACGAGTGTAACGCTCCATCCAGGCCACATTAAAGGAGCTGTCACCAATGATAACTTCCTTAATAATTCCAGGATGTAATATGTTCTCATGGTTACACGATCTCATTACATTTAAGCAATGAACATCTTCTCCAATGCCCAAATTCATGATAAGCTCTGCACAATGTCCCACATTATGGGGATATCTTGCTGGCAGTCTTGAAGGCATCTTCAACCTGCCAGATGCTTGTTGATGCTTTAGACTCAGTATTGCAGAAGTCAGCTCGTACTTAATATCTATCTTGTTCCCCTTATCCTTAGCTTCTGATTGATCATTTTGAAGAGTTCTTAATGGTTCACCCATGATGGTTATTCTGGAAGCTGGCGTAGCAATCTTCTGTGGTATAGAAATCGGTGTAAGCCGCAGGGCAGGGCGGATGGAGATGCTGGCCGGCGGCTGGTCAGGTCTTCAAGGCGGAGGCGGAGGCCGCCGCCGCCGCCGGCGGATTTTTCCTTTTCTTTTCCCC

Coding Potentia
Explanation CPC Score
noncoding -1.02469
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0057700.1 1 42775591 T C
Osa01LNT0057700.1 1 42777600 T C
Osa01LNT0057700.1 1 42778524 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0057700.1 osa-miR2095-5p Cleavage 4.5 10.907 1 22
Osa01LNT0057700.1 osa-miR5509 Translation 3.5 14.015 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0057700.1 1 qHID-1 Morphological trait Seed RG810 RG331
Osa01LNT0057700.1 1 qTGW-1 Morphological trait Seed RG810 RG331
Osa01LNT0057700.1 1 nan Physiological trait Eating quality RG331 RG810
Osa01LNT0057700.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0057700.1 1 qPH1-1 Morphological trait Shoot/Seedling C86 RG236
Osa01LNT0057700.1 1 qBMS1-2 Physiological trait Source activity RZ801 RG331
Osa01LNT0057700.1 1 qHID1-2 Morphological trait Seed RZ801 RG331
Osa01LNT0057700.1 1 qTGW1-3 Morphological trait Seed RZ801 RG331
Osa01LNT0057700.1 1 rrw1b Resistance or Tolerance Other soil stress tolerance C86 RG236
Osa01LNT0057700.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0057700.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0057700.1 1 qRNd1 Resistance or Tolerance Other soil stress tolerance RG236 C86
Osa01LNT0057700.1 1 nan Morphological trait Root RM1387 RM1067
Osa01LNT0057700.1 1 ph1 Morphological trait Dwarf RG236 C547
Osa01LNT0057700.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0057700.1 1 fla1 Morphological trait Culm/leaf RG810 RG331
Osa01LNT0057700.1 1 nan Resistance or Tolerance Other disease resistance RG109 RG236
Osa01LNT0057700.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus