© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0058200.1
AATTAGACGAATGATCAAATATATCTCAAAAAGTGCGACACGTGTGCATAATACTAGCAACTAACAAAATGGTAGCAGTAAATTTTACACTCCATATTGTACAGGAGATGTACTATTCAATTACCATAAGCAAAATTTTTCTGTTTCACCCTACGCATTTACAATGTTAACTCTCAATACGAATCTAAGAATCACAAGTTAATTTTTCCAAAAAAAAAGAAGAAAACAATAATAAGTTGTCTGGAAGTTCACTGATATCTGCAAGGTTTGGTTTCTTCCAGGTAGCAAATAACACTAGCATGCAAACATGTACACCCTTGTTACTTTCGTTGGAACAACGCTGCAAATAAACACACATACTATTATTGATCCCAGCATCCCTCTCAAAAACTTGCGCTGGCTCAATCTTAATGGTTGGCTACAAAATTGCAGAGTCGCATTTATGCGCACCTCGCCCAAACTTAGTCATACTTCATTGAGGTAGCCACAACGCTTAGATCCTGTAATCAGCTTGCAGGTGACAGGTGATTCAGATCCTTTTCATAGTTTGGAGCAGAGGAACACAGCCACAGATTATTATACTGCAATGAGCATAGTTGAAAGTACCAATTCTAGCCCATGCTTCTATCCACAGAAATAGCACATTCGAGTGATTATTGAACTCCTAGATCGTTTGACAACTGCAGTATCCCACGCATTTGAAGGTATGGGTTCTCCAGCAGTTTTTCATTGTTACACTGTTGAGCTTTTGAGATGAGACTTTGAAGCATCCGTTGGTAGGTATCTGGCTCTTCTGTCATCATTCTCTTCAAGAGAAAAGCAGCAGAATAATATGCTACCCTTGAGTCTGTATCATCTAGAAGACCCCTGAAGAATTCATTGCCTTCTACTTCCTTAAGAGCTTCCTGGTCAGCTGTGCATTTACCAATCAAGAGTAAAAGAAGCGCTGCTCGAATATCTGACGTAGCACCAGGGAGATTGCCTCTACCTGTGCTACCAACAGCAATACCCAATGCAATATCATCGCTAGCTGCCCCTTCAAGTTGCATCAATGGCCAGAAAAACAATGAAGTTGGTACGCGTGCTACAAGCTGCATAGGAGCTATCGCAAGGCCTCTCAGAAGTAGTGCTGCCATTGATGTCTCGGAGAGTAAAGTGGTTTGAGCAGTTTGATTTACGCTTATGTCTTGCAATGTCTCACTCCTGCAAAAGTTCTTGTTTCCAACATTTTGATGCGACGCAAGAGTTTCCAGATGGCTCTCGATGTTCTTAGTTGTACAACCAAAAAGTTGACCAAGGGATTGAAGCCCACCCATATGCATCACATTTGAAGATGGCAGTCTCAGACATAATTGAGAAAACAACATATCACACATCTTTAAGATGTTAATATGGTCTGTCTCATTATTTTGGACCACAAGCAACAAAGCACTGTTCATAATATCTATAACCGCAAAAGCTTTGTCCAGGCGATGTTTGCTATGATCAGCAACTGTGTGCTCTTGCATGTCATTGTCATCTAATAATAATTTGCAACGCATCAAAAATTTGTCCAGAACATATAGAAATCCCCATCTAATGAAGTTATGTTTTGACTTCAGAAGCCCACATAGCAGACAAACAGGCAATGAAACTTCTGAGGATGACAAATCTTGGCTTCCGGCAACTTCAATTTCGTCTTGGAGCTTTTGGATTTTAGACCATATAGAACCATCTGTTTCCTCACTGATTTCTGAAAGGAGCAATTCAACTAACCAAATATATCCATGATGCCTATATGATGAAATCTGCGAGTTAAGAAGTGAGTGCAAAGTAGCCCAGCAAAGCCTTGCTCTAAGTGCAACATCAGCATCTTCATGTCCATCTCTAATGCTGCTGAAACACTTGTAAGATTTTGTTACTTGGATCATATAAGCAAACTCAGTGTCAATCCTAGAAAATGTGCTGACTGTTCCATCAAGTTTCCTGATAACCTTGTCCAGAAGCACATTCAACTGCTCATATTCTGTTGACTGTGACAAAGCTGATGATATAGCTTTTCTCAGCATGTCTCCAACGCCTTCAACACCGTGCTTCACAGAAATATAGAAGGCCTCTGGAGCATCAGCACATGCAAGAAGGGAAGCAAGGGGCTGAGCATCATCATAAGTGTAGGTCGAAAGGCCGCCAGCCAAGAATGTTTCATTTATTTGATGCAATACATAGTCAAATAGAACAAAGAACAAATCCCGCTTCTCCTCCCTTGAGTTGGCTCGTGAATACTCGAGACAGATATAGTCAACTCCACCAACGCGATCTATCTGGTCAGGAAGAAAATGTGTATCAATGGCACCGTTTGGAGCTCCATCAGATACTTGATACAACATATTTGTCAGCATGCAAATAAGTTTGCTGTGCACTACTTTTGCCCACGAATGCTCCACACTTATCTCAAGAAGAGTCTTGATTACCCTTATGTCCAGACCTCCAAGTCTACTCCTAATGATTTTTCCTCCATCACATACAAAATAAAATAGACAGCTCAAAGCTGATGCCCATACAATCTCTTGCCGCTCCTCCATCTGAACAAGGAGAAGAAGAACCTCAAACATTATTTTCAGAAGCCACGACTCAAACTGATCAATAGCAGGACTAACCCTCTGCTCTTGTTCAGATTCTGTAGCCCTCTGTTCATCCATACTTGATCCATATTCGTTGTTCATATAAGAATGATTCACAGTTTCACTTTTCTCAATAAGTGGTGCATTCTCAACTATCATAGGCTCCAGCAGGTGTGCATGAATCCCAAGGTTTAGTATCAGATCAAATGCCTTTGTCCTGGCAGGAGATTTTTGAGAGCTCAACATACCCTCAAGCATATATAGTGTTAGAGGGGCAGCGGCCTCCGAGTCCATCATATACATGTCGATAACAAGTTTGATAAGGACACTGAATGCCACATCTGCTGAAGGTTGGCGACTCTGGGTGGTCAATCTTGATGGAGCACTGAACTGATTTGAGTTTGAAGTTGTTTCTGAGCAAACTTCAGCTATGACTTCGGAAATTTCGGCAGGGTTCAATTTTAAAGGTTGCTGCTCACTGTAGTGCCTATACTGAAAAAGGGGACGTGCTCGAGGCTGGAAAGTATTTGCAGGTATGTTCATCCAAACTTGATTAGGGCCTGATTTCATGCGTTTTGAGGCAGTTATTGCTTTCAAGTGACTCTGTGATGATGCAAAAGTACTTGCTGTAGAAGTTGAAGGTTGCAACAGATCAATATCAGGAAAGTCCTGGATAAAAGAATATTTCCATTGTTGATCATTAATCTTCGCCTCCATATCTCCAACTAGAAGAGCTGCAGCACCAACTTCAAGAAAACCCTGTGTATGAAAATCTTGAAGGTCCGCAAAATCATTGCTTTCTTTGGTAGAAGCCGATGCTTGTCTTTCACCATATACATGCCATCGCCAGTTTAAAATGTCAAAGGATATATATTTGGTATCATCGGCAGGCTCTCCCCCATCAGCTTTTTCAGTTGCTGATGATATTAAATCTGAAGGGGCATGTGATTCCTTTGATTCAACAAGATCCATGTTGGTAATAGCTTCTGGAGTCAACTGAGAAACTAAGGACTTGTTGAAAAAGGAAGAAAGTGAGGGGAGGGATTGTTTTGTAGAGGTTGGTGCAACAGAGTGGCCAATGGGTTGGAAGGACAACTTTGGGATATGCCTGGCAACTAATGAGCGGACGTAGTTCAAAGACTTGACAAGAGATGGTGAAGCAAAGTTGGTTATTGGTGGAGCAGCAACAGAGGAATGTGGCGAAGCTGATGATGATCTCTGAGTTCCCAATGGTTCGCATTTTGCTATGGTATTTGCGCAAAAGAGATCGATTTGGCGTAGAGTTTGCACCCTTGGGGTGTACCTGATAAGATAAGTCTTTAACAAGGAGACACATTTAGGGACAACTGCGGGGCTACGATCTCTTTCAGCAAGAGCATGGTCGATGAGGACATTGTAAGCCATATCGATGGTTGATGGGTTGGCGATATAATCCCGGAGGGTTCTGGAGGCCTCGGCGGGGGCAGAGGAAGCGGCGGGTGGCGGGGCATGGGTGTGGGTGTGGGGAGCGGGAGGAGAGAGGCAGTCGGCGACGGCGCGGCGGAGCGGCTCGGGAGGCTTGCGGGCGGAGGAGAAGGAAATGGAAGCGGCGAGGGAGACGGATCGCGGTGGCCGGTGAGGGGGCAGCTGCCTCCCCACCCGCTTCGACTCCTGGACCTGGACCGCCATCCCGGATCTCTGATGCCCTAGATAGCCTCGCCCTAACTGCCGCCGACGCCGACGCCGACGCCCGCCGGAGCTCGCCGGAGCTCCGTCGCCTGGGATCCCTCGATCGATTGTGAATTTTGTGACAGTG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0058200.1 | 1 | 43049368 | C | T |
| Osa01LNT0058200.1 | 1 | 43049375 | G | A |
| Osa01LNT0058200.1 | 1 | 43050000 | C | T |
| Osa01LNT0058200.1 | 1 | 43050825 | A | G |
| Osa01LNT0058200.1 | 1 | 43051273 | T | C |
| Osa01LNT0058200.1 | 1 | 43052151 | A | C |
| Osa01LNT0058200.1 | 1 | 43053066 | T | A |
| Osa01LNT0058200.1 | 1 | 43053510 | T | C |
| Osa01LNT0058200.1 | 1 | 43053800 | A | G |
| Osa01LNT0058200.1 | 1 | 43054884 | A | G |
| Osa01LNT0058200.1 | 1 | 43054996 | C | T |
| Osa01LNT0058200.1 | 1 | 43055014 | T | C |
| Osa01LNT0058200.1 | 1 | 43056031 | A | G |
| Osa01LNT0058200.1 | 1 | 43056194 | G | A |
| Osa01LNT0058200.1 | 1 | 43057248 | A | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0058200.1 | osa-miR5543 | Cleavage | 4.5 | 11.92 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR5794 | Translation | 5.0 | 7.03 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR5797 | Translation | 4.5 | 16.536 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR5816 | Cleavage | 4.5 | 12.582 | 1 | 24 |
| Osa01LNT0058200.1 | osa-miR6246 | Cleavage | 4.5 | 17.907 | 1 | 23 |
| Osa01LNT0058200.1 | osa-miR171b | Translation | 5.0 | 24.26 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR171c-5p | Cleavage | 5.0 | 15.258 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR171c-3p | Translation | 5.0 | 24.26 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR171d-3p | Translation | 5.0 | 24.26 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR171e-3p | Translation | 5.0 | 24.26 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR171f-3p | Translation | 5.0 | 24.26 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR444a-3p.2 | Cleavage | 5.0 | 17.87 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR395o | Cleavage | 5.0 | 16.966 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR395v | Cleavage | 5.0 | 16.966 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR1424 | Translation | 5.0 | 19.933 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR444d.2 | Cleavage | 5.0 | 17.87 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR444e | Cleavage | 5.0 | 17.87 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR810b.1 | Translation | 5.0 | 10.262 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR1856 | Translation | 5.0 | 24.476 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR1877 | Cleavage | 5.0 | 12.848 | 1 | 24 |
| Osa01LNT0058200.1 | osa-miR1320-5p | Cleavage | 4.0 | 7.082 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR1320-5p | Cleavage | 5.0 | 19.792 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR1320-3p | Translation | 4.5 | 15.21 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR2093-3p | Translation | 5.0 | 14.673 | 1 | 20 |
| Osa01LNT0058200.1 | osa-miR2095-3p | Translation | 5.0 | 14.576 | 1 | 20 |
| Osa01LNT0058200.1 | osa-miR2099-5p | Cleavage | 5.0 | 19.194 | 1 | 22 |
| Osa01LNT0058200.1 | osa-miR2876-5p | Cleavage | 4.5 | 21.515 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR2876-3p | Cleavage | 5.0 | 11.5 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR3981-5p | Cleavage | 5.0 | 16.302 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR5150-3p | Cleavage | 4.5 | 10.747 | 1 | 24 |
| Osa01LNT0058200.1 | osa-miR5499 | Cleavage | 4.0 | 6.783 | 1 | 21 |
| Osa01LNT0058200.1 | osa-miR5525 | Cleavage | 4.5 | 18.325 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0058200.1 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Osa01LNT0058200.1 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0058200.1 | 1 | nan | Morphological trait | Root | RM1387 | RM1067 |
| Osa01LNT0058200.1 | 1 | qHID-1 | Morphological trait | Seed | RG810 | RG331 |
| Osa01LNT0058200.1 | 1 | ph1 | Morphological trait | Dwarf | RG236 | C547 |
| Osa01LNT0058200.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RG810 | RG331 |
| Osa01LNT0058200.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RG810 | RG331 |
| Osa01LNT0058200.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RG810 | RG331 |
| Osa01LNT0058200.1 | 1 | fla1 | Morphological trait | Culm/leaf | RG810 | RG331 |
| Osa01LNT0058200.1 | 1 | nan | Resistance or Tolerance | Other disease resistance | RG109 | RG236 |
| Osa01LNT0058200.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0058200.1 | 1 | qTGW-1 | Morphological trait | Seed | RG810 | RG331 |
| Osa01LNT0058200.1 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0058200.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0058200.1 | 1 | nan | Physiological trait | Eating quality | RG331 | RG810 |
| Osa01LNT0058200.1 | 1 | qBMS1-2 | Physiological trait | Source activity | RZ801 | RG331 |
| Osa01LNT0058200.1 | 1 | qHID1-2 | Morphological trait | Seed | RZ801 | RG331 |
| Osa01LNT0058200.1 | 1 | qTGW1-3 | Morphological trait | Seed | RZ801 | RG331 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)