© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0058400.1
CTCCAAATACACTCATTGATGCTATTGATACTAAATAGCAAAGCCACAAGAGCACGTAGAAAATGATCTTGAATTTTCTCAATCTCATTGTCAGAAATGTGCCAAGCATTGAACAGTACCCACTGGTTACACTCATGAAAAGCTCCTTCCAACAATGTGTCAAGCAATATGGACAATATGCTGACCTCTGCACATGATTCCATTTTCAAGTGCTGAATCATAGAAGGCAAGAATGTGCTGAATACACTCCCCCCTTTCCATTTCCAAGTGCAAAGAATCTCAGCAGCAACCCATGCTCTAGACAATGAAGGAACAGTTGAAGTAGTATCAATTGATTGTGATGTGTTGTAACATGTATTTCCTGGAACACCTAAGATCACTTCACCAAAGCCAAGGTTAAGAACAAGCTTGTCAACAAAAGCAACAAATTGATGGTGTTTCAGTCCCGTTTCATTTGTAATAACTGGCTCAAATTTGATCTTCACTGGTGCATTCTCATTTTGTAAAGATGGTTTCACCCAGAGTGGCCAATATTCTCCCTCAGATAAAAGAAGATAAAAAAAACTCTGCAATTTTGTGTGATCAAGAGAGATGAGCTTCAACATGTTCACCATCCACTCTGAGCATAAGACTGATGTGCTCTCAGTTGGCAACTCTAGTGTCTGAAATAAAGCACACCTGACAGATTGAGCTAAAATATTTAACAAATTATTCAAGGTGAATGGATGAAGATCACTCCAAAAGGATGGACTTAAGCTTTGGCAAAAGGTATGTATACTCTCTGCAAGGTTAGCTTTCAAATGTATTCCCTCATCCAAATGATCATCTGAACTGTTGCATGCAGAAGACCCAACATCAATATCTTCTTTATAACCTTTCAAGTCATGTTCTTCATCGAGTGTTAAGGCCATGCTATATTCCCATTCAATGATAAACAGAGCTGCCAGAACAGAAGGAAATAAAGAATCTTCCTCTAGTCTTCTCAGGGCAAATAAGCTACCCTCAAGAACTTTGAAAGCAAAATGAGCCATCTTAATGTTTGATGAAAAGGATTGTGCTCCTATAACCTTCGAGTCCTTTGGTTCAGTAGGCAATAACACCACATATGCAAACCTTGCCCACTCAAAAGTTGATGTCATGAGTACTGATGTCAAACACTTCAAAATGGACCCGAGCATTTTGTGGACAGTATCAGCAGAAAGAAAACAAATTTGGTCATCTTGATCTGAGCCACCAAGTGCAGCACATACATAATGGACATGGGAATCTGTAGCAGGCAAATCACAGAAGACAGATTCTGCAGCAGAATCTAATAGGTCATGCCGCCAATGTTCTGGTAGAGAGCCATTTTTCTGCAAATTTCTCAACTTGCCCCCAGCAATTCTTTCTCTTACCTTTTGAAGTATAAGTGTCAGCAATTCAAATTGGTCATCAACGTGTGAGTTCTTATTATCAACAGGGTGCTTTTGCTTAGCACTAGTATATTTAATAATCGTACACCACTGGTCAAAGAAGCACTCATCTATAATTAAAGAGAGCAACAGATCGATCTTTGAGCTACAAGTACTATATTTCCTATCCAAACACCAGGGGACAAAGTCACCATTGAACACATCCAGATAACCTTGGACAGATTCCTCACTCTCTTTCTGTGAATTCTTCAAGAACAAAGGGACAGGCCTGAATATTTCAACCAAAACTGATAGAAGTTTAACAACAATTGGAGTGTCCTGCATGAAAGCAAAACATTTTAGAATATCAATCTGGCTGGTAAAAAGCGCTTGTTTGCATATAATAGCATAAATTCACAGCATATCTTTATCTTGAAGCTCATGTTGTTGTTTGCATTATATATGTTGACAATTCATAGAAGAAAATTGAAGCAATTGGACTTCTATAAAAGGAGAAAATTTTATGTGAATGATGAACCCCAAATATATATAGCATGGATGGCAGTTCCAGAAGATCTTAAGTCACTTGCTCTGCCTGCAGCTAGGTAGAGCTGATCCTGTTCCAACAGAATTTTGACCCACAATGATCTCTAGTTCATAGGGCTGTATCCCTACTTACCTTCTGGATCTATAACAGAAATCATTTGTAGACAAATGGAAAAAGACCAGCTTTTGTAAAGAAATGTAACACTTGCAAGCATTAAAAATAATATATAAATATATTCAGAGTACACTCAGCAATCCCTAATGTTAGACTTCAATGGATCTTTTTTCAAACCTGCTCTGCTCCCATTTCGAGTCAAGAGAGTCATGCTGGAGAGAAAAGGTCAAAAATTCGAATTCATTGGCATAGTATAAATATAGATAAGTTCAATAACAGCAAAATTATTTGGCAAATGTATACTCAACCCTGCTAGATACTCAAACTCTACTCTTCTTACACAAGTAGATGAATTGACTGAAAATAAAGCAATAGAAGGCTGGGATCAGATGTGTTAGTGAAGTAACGAAAATAAAGTTGACTCTTTCAAGAAGTATATATGCAAGTGTTATTGCAACAGAAACACACCTCAACAAGAAGTAAACAGAAGGAATGAATTCAACACTTGAGCTTACCATAGACTTGATAGCTGGCACAGATTGTTCAATCAGTGGTCTTGCTAAGCTTTCCAATGGCCATGTTTTACCTTTCTGTACAATGAGCTGATCCAACGAAATAAAAAAGGACACAACTTGTTCCACATGATACTGAAAATTTGGCAAACTCTCCCTTTGATGGATTATATCCAAACAGTCCTTCAATAGAGTCTCACAAGCAATATTTAACAAATGATTTTCCATAGCTGAAATCTCATCCAATATTTCAATGATGCATTTCCCCAAATCCTGAAGATAATAAGTTGGGTAGCGTGTGCTTGATGCCAACAGTGACTCCTTATGAGATAACTGACAATCACCACTGATTGCTTCATCAGACAATCCACTCAAACTAATATCCTGGTTTTTGGAAGATGGTATTCGAAGGTAATCATGCCAAACAACTTTTGCAAGAAAGTAAGTTATGAGCTTGATAGGAATATCATCCGAAGAACCTCCTCCAGAATGTCTCGGTAGAACTTTTAGAAGCCACAAGAAACTCTGTTTAAAGGTAGTAAAGAATGCCAAACTGTCAGCAGCTGATAATTGCCTCTGGTTTCTTCCAGCCCAGAGATTATGTAAGAAGTCAAAAACAAATTGCTCTGTAGTTACAGCTTTAGATGGTATAGACTCCAAAAACTGAACCAGGAGAGGGTATGAGGCTTGCTTGGATCCATAGCATCCATTTTGTAGAAAGTGCCAAAACCGGCTGAAAACAACCTTGTGAATGTTGCAATATGACCAAGCCTCTGGAAACCTTCTAGAGAAAGCAAGAAATGCATCCCACATAGAGGAGTGACATGATGGGTCCTTTTCATTGAAGGCACCAAGTAAAGCAGGAGATAGTACCTTCATGGCTTCTTCATTGAAAACATGAGAAACATGTTTGATATAACTTGCAAGCAGTGAGTATGTGGCAGACCGTATAATCGCACTTTTTGACTTGAGGAAATCAAGAAAATATTTATTCATAGAAAATGCAGATTCAGCAGAAGACAATGTGCCAGATAGAACTTTTGAAAGACTCGTATTTTCAGAACTGGAATTGTCACGGACACAATTTTGTAATTTTACACCTAGCAAAATGTCAATCAGAGTTGCCATTGCTAACAATGATGATGATATTACCCTCTGGTGCATATCTTCTAGTTCATCCATTGGTGTAGCCTTGTCAGACAATGCTTGTGTTGTTAACTTCAAATTCTCGTTCAAGTGAAGAAATGTTTCCTTCACACATAACATTAAAGCATCCAACCTTTTATCTGATTGTGGGAAGGCAGCCTCAAACGAATGCCGAGCAGCCTGTGCAACCTCAAGAGCAGGGTCAAACTGAGAAAACCACCAAGGACCCATCAAAGCCTTAAGATGCGGAGCAAGACCCTTCTTGACAGTTTTGACGAGGCTAGACATGGTATCGTGAGTAGCACGACGAACTTCTCTGTTATAGTCAAGCAGCAGCCTCTTGTACTCGAATGCCCATTGTGGAACAATTTGCACAACTTCCTGACCAGGTTTTTGTGCAAAGAGCATAGAGAGCGTAGATAATGCCTTGAGCTTTGTTGTTGGATCCTTCCTTCCTAATCTCCTTAGGTGCTGCAGCACCTCACTGTCCACATCGGGAGGGAGGAGAATCGAGGCATCGGGGTCGGTCGAGGACGAAGGCGCGGCGGGCTCAACACGGGAGGCGCCATGGTAACCCCCGAAACCAACGATGGGGACGGCACCCTGCGCATGCGGCAGCAGCGACGCCGCCAAGCCGCTGCTGGCAGCTCGGCCCTTGTGCTTCCCCATCGCCTAATCTCGGCCGCCGCCGCCGCCGGCCGCCCGCCCGCCGCCGAGGAGCCCGATCAAGCAAGAAGAAGAAGAAGAAGAAGAACCCTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0058400.1 | 1 | 43206180 | C | T |
| Osa01LNT0058400.1 | 1 | 43206234 | C | T |
| Osa01LNT0058400.1 | 1 | 43206791 | G | A |
| Osa01LNT0058400.1 | 1 | 43205729 | G | A |
| Osa01LNT0058400.1 | 1 | 43205876 | C | T |
| Osa01LNT0058400.1 | 1 | 43207250 | T | C |
| Osa01LNT0058400.1 | 1 | 43207798 | C | T |
| Osa01LNT0058400.1 | 1 | 43208269 | G | A |
| Osa01LNT0058400.1 | 1 | 43208516 | G | A |
| Osa01LNT0058400.1 | 1 | 43210477 | T | G |
| Osa01LNT0058400.1 | 1 | 43210524 | C | T |
| Osa01LNT0058400.1 | 1 | 43210704 | C | T |
| Osa01LNT0058400.1 | 1 | 43210812 | A | G |
| Osa01LNT0058400.1 | 1 | 43211014 | A | C |
| Osa01LNT0058400.1 | 1 | 43211071 | T | C |
| Osa01LNT0058400.1 | 1 | 43211087 | T | A |
| Osa01LNT0058400.1 | 1 | 43211116 | A | T |
| Osa01LNT0058400.1 | 1 | 43211764 | A | G |
| Osa01LNT0058400.1 | 1 | 43211982 | G | A |
| Osa01LNT0058400.1 | 1 | 43213520 | A | C |
| Osa01LNT0058400.1 | 1 | 43214719 | A | G |
| Osa01LNT0058400.1 | 1 | 43214838 | A | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0058400.1 | osa-miR5543 | Translation | 3.0 | 11.764 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR6254 | Translation | 4.0 | 15.887 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR166e-3p | Cleavage | 5.0 | 18.168 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR160f-3p | Cleavage | 5.0 | 14.243 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR444a-5p | Translation | 4.5 | 17.144 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR815a | Cleavage | 4.0 | 14.654 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR815a | Cleavage | 4.0 | 11.553 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR815b | Cleavage | 4.0 | 14.654 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR815b | Cleavage | 4.0 | 11.553 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR815c | Cleavage | 4.0 | 14.654 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR815c | Cleavage | 4.0 | 11.553 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR1428a-5p | Translation | 5.0 | 16.061 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR1438 | Translation | 3.0 | 20.532 | 1 | 22 |
| Osa01LNT0058400.1 | osa-miR1850.2 | Cleavage | 3.0 | 13.887 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR1852 | Cleavage | 4.5 | 16.923 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR1860-5p | Translation | 5.0 | 19.141 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR1865-5p | Cleavage | 4.0 | 17.596 | 1 | 24 |
| Osa01LNT0058400.1 | osa-miR1866-3p | Cleavage | 4.5 | 13.611 | 1 | 22 |
| Osa01LNT0058400.1 | osa-miR1320-3p | Cleavage | 5.0 | 8.856 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR2095-3p | Cleavage | 5.0 | 10.963 | 1 | 20 |
| Osa01LNT0058400.1 | osa-miR2099-5p | Cleavage | 5.0 | 10.519 | 1 | 22 |
| Osa01LNT0058400.1 | osa-miR2099-5p | Translation | 5.0 | 6.996 | 1 | 22 |
| Osa01LNT0058400.1 | osa-miR2099-3p | Cleavage | 4.5 | 11.459 | 1 | 20 |
| Osa01LNT0058400.1 | osa-miR2099-3p | Translation | 5.0 | 18.357 | 1 | 20 |
| Osa01LNT0058400.1 | osa-miR2106 | Translation | 4.5 | 12.722 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR2920 | Cleavage | 5.0 | 15.643 | 1 | 23 |
| Osa01LNT0058400.1 | osa-miR1862f | Cleavage | 4.5 | 13.354 | 1 | 20 |
| Osa01LNT0058400.1 | osa-miR1862g | Cleavage | 4.5 | 13.354 | 1 | 20 |
| Osa01LNT0058400.1 | osa-miR3982-3p | Translation | 4.0 | 18.082 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR5076 | Cleavage | 0.0 | 18.321 | 1 | 22 |
| Osa01LNT0058400.1 | osa-miR5485 | Translation | 5.0 | 18.701 | 1 | 21 |
| Osa01LNT0058400.1 | osa-miR5487 | Cleavage | 5.0 | 19.252 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0058400.1 | 1 | qRNd1 | Resistance or Tolerance | Other soil stress tolerance | RG236 | C86 |
| Osa01LNT0058400.1 | 1 | nan | Morphological trait | Root | RM1387 | RM1067 |
| Osa01LNT0058400.1 | 1 | ph1 | Morphological trait | Dwarf | RG236 | C547 |
| Osa01LNT0058400.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RG810 | RG331 |
| Osa01LNT0058400.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RG810 | RG331 |
| Osa01LNT0058400.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | RG810 | RG331 |
| Osa01LNT0058400.1 | 1 | fla1 | Morphological trait | Culm/leaf | RG810 | RG331 |
| Osa01LNT0058400.1 | 1 | nan | Resistance or Tolerance | Other disease resistance | RG109 | RG236 |
| Osa01LNT0058400.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0058400.1 | 1 | qHID-1 | Morphological trait | Seed | RG810 | RG331 |
| Osa01LNT0058400.1 | 1 | qTGW-1 | Morphological trait | Seed | RG810 | RG331 |
| Osa01LNT0058400.1 | 1 | nan | Physiological trait | Eating quality | RG331 | RG810 |
| Osa01LNT0058400.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RZ14 | R117 |
| Osa01LNT0058400.1 | 1 | qPH1-1 | Morphological trait | Shoot/Seedling | C86 | RG236 |
| Osa01LNT0058400.1 | 1 | qBMS1-2 | Physiological trait | Source activity | RZ801 | RG331 |
| Osa01LNT0058400.1 | 1 | qHID1-2 | Morphological trait | Seed | RZ801 | RG331 |
| Osa01LNT0058400.1 | 1 | qTGW1-3 | Morphological trait | Seed | RZ801 | RG331 |
| Osa01LNT0058400.1 | 1 | rrw1b | Resistance or Tolerance | Other soil stress tolerance | C86 | RG236 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa01LNT0058400.1 | osa-MIR5076 | 100.0 | 229 | 1 | 229 | 5.7e-119 | 424 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)