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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0058900.1

AAACAAATCAATATACATTGATATATAATATTTCTGAAACAAATCAATATAATACATGGATCACGTACAGAGTACAGTATATATATGTGTGTGAGCTAGCTAGCTAGCTAGGTGTCATGTCGTCGTCATCTAACTACAACACTCTTAACTCCCCTGACAATAAAATTCATCACCAGTAAGTGACCATCTATAGCTAGATGCAAGCAAAACCAACAACTTGAATTAAAATTTTGTTTGATTTCTGGATCGATCCTAGATGCGGCCGGCAGTGCTCAGTCCATCCTCCTCACACATTAATTAACTTGTGAAAAAATGAAGCTAACTAATTAAAGCAGAGGGGGTGAACATATGCATGAGAGAGCCAGCTGATCGATGAGCTAACTAGCTATAGCCATATATATTTACTACTAGATGCAAGCATGCATGCAAGAATTAATATATGTACTACTATAAACTATATATATGTACACTACACACTGATATGATGATTAATTAATTAATCATGCTAGCATGCATATGCAGGGAGAGGATGATGATCGAGATTAATTTAGCTAGCAGGCGGCGGACTTGGCGAAAGGGCTGAACAAGTGCGGGGCGGTGGGCTTGTTGGTGCGGTCGGCGGCGGCGGTGGGGGAAGCTCCGGCGGCGGCGGCGGTGGCGAGGCGCTCGCAGGAGGGGCAGATGGAGAGCGTGGCGGCGGGGACGGGGAGGGTGGTGGCCATGAAGAAGCCGGCGGCGGTGGAGTGGGTCAGAGCCCTGAGCTGCTGGAGCTCACGATGGAGGCGTCGGTTCTCCTCCGTCAGCGTCTCGCAGCAGCGCTTCAGAAGCTCGCAATCCACCTCCGTCTGCTTCAGCTTCGTCCTGGCTCTTCTGTTTTGGAACCACACCTCAACTTGCCTTGGCCTCAGGTTTAGCTGCTTCGCCAAAGCAACCTTTTGCTTAGGGTTGAGAGTGCTATGCTCCTTGAAGCGATCCTCCAGCAGAGCCGACTGCTCCTTGCTCAGCCTCAGCTTCTTCCGGCTGTTGCAGCCCTCGTCGTCGTCCGCCGCCGCAGCCGACGACGAGTAGAGCGCCCTCTCGTACTCGTATTCGTACTCCTCCTCTTCCGCCCGCACCACCTCCCTCTTCACCACCACCTGCGGCTGCCCCCCGCTCTCTGCCGGGAGCCTCAGCGTCAGCAGGGACGCCGCCGCCGACGACGGCGCTTCGTCTCTACTTTCTCTCTGCCGCCTGTGGCCGCCGGAGCCCAGGGAGAGGCCCAGAGCTAGACCCACGTCCTCATCATCTTGCGCCATCCACCACGCCAACAACCAAGCGCTCTCTCTCTCTCTCTCTCCCTCTCTCTTGTGTGCTAGCTCTAGCTCTAGAGAGAGATGAAGGTAGGTAGCTATAGAGACGATGTGAGATGAGGAAGAAGAGAAGAGGGAGAAGGGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.651686
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0058900.1 10 285643 T A
Osa10LNT0058900.1 10 285728 C T
Osa10LNT0058900.1 10 286206 A C
Osa10LNT0058900.1 10 286314 G C
Osa10LNT0058900.1 10 286757 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0058900.1 osa-miR5802 Cleavage 4.5 15.178 1 24
Osa10LNT0058900.1 osa-miR5818 Cleavage 3.5 15.401 1 21
Osa10LNT0058900.1 osa-miR390-3p Cleavage 5.0 15.17 1 20
Osa10LNT0058900.1 osa-miR5075 Translation 4.5 21.408 1 21
Osa10LNT0058900.1 osa-miR5497 Cleavage 5.0 14.963 1 21
Osa10LNT0058900.1 osa-miR5502 Cleavage 3.0 16.766 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus