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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0059000.1

AACCAAGTCGTTATAATTCATAAGATACCCAATATATAGTTATAATTTAATATTTACAGCGTGTTAATAAATATCCCATGCAACGCACGGGTTAACGGCTAGTATACTTAATTTGGCATGAACCATGACGAATGTGCACCCAAGAAGAGTGTAGGTATAAATGTCAAGACGACAGCGTGTTGTTATTGGCTCTATATCTGATTGAGCAATGCAAGAAGTGCAGCAGGTTGAGGACGCTAACAACAGCCATCATCCAGAAGAAGTAGTCCAGGTGCCCCTCGTCGAGGTTGTCCGGGATCCAGCCGGCCCCGCCGCCGCGCGTGGTGGCCGCCGCCACCACGACGAGCACGCCGGAGTTGAGGTAGTTGGCGACCGCGATGGCGAGCTGCCCGAGCGCCGTGCACAGGCTCTTCATCGACTCCGGCGACTGCTCGTAGAAGAACTCCATCATGCCGATCACGCTGAACGCCTCCGCCACGCCCAGCACCAGGTACGACGGCGCCTGCCACATGATGCTCACCGGCGCTGGCGCCGTCCCCAGCCGCCGTGCCTCGACCACCGCCGAGTACGCCATGGCCACCGCGGCGAGCGCGAGGCCGACGCCAATGCGCTGCAGGTGGGAGATGCCACGGTCCTTGCCGGTGACGCGCCGTGCCAGTGGCACCAGCACGGTGTCGTAGACGGGGACCCAGACGAGGACGCTGATGACGTCGAAGGTGGCGATTGAGGCGGCCGGAAGGGTGAACGGGCCGACGCGGCCGTCCATGGCCATGCCCTGCTCGATCAGCGTCGACGTAATCTGCGCGGTCACCACGAAGAAGACGACCATGGACACCCAGACCGGGAACATCCGCAGCAGGATCTTCAGCTCCTCCACCTGCGAAACCGTGCACAGCCTCCACGGGCTCCACTGCGCCGGCGAGATCTCGTCGGACAAGATGGCAGCCTTGTCAAAGAACCTGAATTGAGTGGTGAGTTGAGTCCTGTAATCATCTTCAGTCACTTTTGAAACCTCATGCAGGAGTGAGCTATCGTCAGGCAATTTCAGCCTATGATTCCTTACAGCTGCAACCACCACCTGGGACACCCTTGTCAGTGGACTCCCTCCCTGTTTCTTGTACCTGTAAACCTTCCTACCAGCGAAAAACAGGGCGAGGCCGAACCCCGAGAGTAGCATCGGGATCGCAAAACCGACGCTCCACCCTATGTTGGCCACCACCCAGACAAGCAGAGTCGTCGACAGCAGTGAGCCGACGTTCATTGAGAAGTAATACCAGTTGAAGAATGAGCCCTTCGCCAGCCGTTCCACCGGGTCAGCACTGTCAAATTGATCGGCTCCAAAGGCTGGAATGCAGGGCTTCATACATCCACTTCCAACGGCAGTAAGGTAGAGCCCTGTGTAGACCGTGGCACGGCAAATGTTCCAATTGTAGTAAGAAGAATTCAGGAACAATGGTGATGATGAAACCGTCACAATGAGCATTCCGATGATGATAATAAAGAGGGAAATAACTGTCGTCCAGTATCTTCCCCAATATGTATCAGCCAAGAAGGCTCCAATGAGTGGTGTGAAGAAGGAAGTGCCGATCCAAATAGACACACTTTGTGCAGCGTCGATGTTGCTTTCGTGCAGCGCACTCGTGAGGTACATGACTAAGTTCTTCGAAACCATGAAGAAGCACAAGGTTTCAGCGAATTGAGCACCTAAAATGAAGAAGCATGCTCTCCAATGCCCTGTACTCTGCTTCAGTGCAGGCTTTTTGTCACTATTAACTGTTCCATCACATGTGTATTGTGAACATTGTTCCTCCGGAGGCAGCTGCTGAATCAGTGGCGTCTCCTCATCTGCTGCCCCTGCCTCCATGTAAGCCTTGTTGGAAAGAACCCAACCACTAAAAGAACTCGAGATTAATTCAGTAGTATAATCCTTCTACTGATCACGCACTTCGTACAAGCCATCCTCCATCTGAGGAGAGGGGGCAATGGAGGGCAGGGCAGAAGAGGGAGACGGAGCTGGAAATGGAGATGGTGCCATGTCCATCGCACTATCGCTGTAGCAGTAAATGAGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.708824
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0059000.1 10 776314 A C
Osa10LNT0059000.1 10 771859 T C
Osa10LNT0059000.1 10 772038 T C
Osa10LNT0059000.1 10 772257 C T
Osa10LNT0059000.1 10 772591 G A
Osa10LNT0059000.1 10 772820 C T
Osa10LNT0059000.1 10 773024 A G
Osa10LNT0059000.1 10 773080 A G
Osa10LNT0059000.1 10 773224 A G
Osa10LNT0059000.1 10 773318 G A
Osa10LNT0059000.1 10 773358 A G
Osa10LNT0059000.1 10 773367 T C
Osa10LNT0059000.1 10 773628 T C
Osa10LNT0059000.1 10 774265 T G
Osa10LNT0059000.1 10 774287 T C
Osa10LNT0059000.1 10 774342 A G
Osa10LNT0059000.1 10 774638 C A
Osa10LNT0059000.1 10 775462 T C
Osa10LNT0059000.1 10 775509 G A
Osa10LNT0059000.1 10 775820 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0059000.1 osa-miR5824 Translation 5.0 19.015 1 24
Osa10LNT0059000.1 osa-miR5155 Translation 4.0 21.313 1 24
Osa10LNT0059000.1 osa-miR5504 Cleavage 4.0 16.605 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus