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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0059700.1

GGCGCTACAAACTGCCTTGTAGCTTTTGGTTTTCTCTTCCTCTTATTGTGATGAATATAGAAATGGAAATCGAGGCTACCAATATGCCCGAGACTTAAGCCACGACATGCATGAGTTGTGCCATCCCACAACGCACAATATACTATAGCACATATGACAACAGAAAAACAAAAAATGATGGCCTCGACGTGAACACGCGCATGCCTCAAGGCTACTGAACTAGAATAGGTTCCACGCAGAGATGCACATCTACACCTTCAGAAGCATCAAGGGTAAACCTCGATGATCGATCGGGCACCTAGCACTGGTGTGATTTTGTAGTCACTGAATCCAGCCTCTAAGAAAATCTTCTTCCATTCATGCTCCTCTCGCTCGATGCCATCAACGTACATCATGAAAACATCAAACAAAATTTGCATCTCCTTGGGAACAATTTCCTTGGGTCCAATCCCAACAACCACCTCAATAATTATCACCTTTCCCCCAGCATCCCTTGCCAGGATTGCCTCTTTGCACCGCCGCAGAATCTTGACACAATCATCATCTTGCCAAGCATGCAAAATATACTTAAGTAGCACAACATCAGCTGCTGGAATAAACTCGAAAAAGTCACCACCGACGAACTGGATGTTGCTATGGGTGGTGGGAGCCTCGGCGACGATATGAGGGAGATCCAAAACCGTACACTTGATGTTTGGGAATGCCGTCGCTATAGCTGCAGCTGCAGCACCATGGCCACCGCCAACATCAACCAGAGAGCTGATGCCCTGGAAAACGCCACAGCTCTCCTTCAAGATGATATCCATGGCGACACGGCTGTCCTCAACCATGGCGGTGTTGAACACGCTACCATCCTTGGCATCATTTGCTATAATCTCCCACCGCGTGCAACCGTGCGCCACCTCGAAGGGTGTCATGGCGGCTGCTTGCTCGATGGTGAACCACTCATGAATGCTGAAATGAGAGGCCACAGTGAGCGGGTTGACTAACACACGCACCAAATGGGACAGGGCATGTGTTCTCTCGCCATCACCGTTGAGGAGGAGGCGAGATACTCGGGTGAGTGTGTACATGGCCTCACCATTGTGGTCTTCGACGGCGAATACGCCAGAGACAGTGGGCACGCGCATGAGCCGCCGGAGGTGGGAGAGCTTCGTCGGGTGCAGCCCGATATTGAGGGCGAGGTCAGACAAGGTGGCAGCGCCGCCATTGCGGTGGATGGCATCGGAAATGCACAGGTCAGTGGCGGCCCTAAGTGCCGTGGACTTGATGAAGGCGAAGCAGTGGTGGTAGAGCTCGATCTCAGCTTGGATCAAATCATCGGTGCTCGTCATCTGCTCATCTTCTTCTTGGACACGTTGTGCCATGGTGTTCTTCGTGCAATTAAGTACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.668307
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0059700.1 osa-miR5809 Translation 4.0 23.62 1 20
Osa10LNT0059700.1 osa-miR2871a-3p Cleavage 5.0 13.954 1 21
Osa10LNT0059700.1 osa-miR2871b Cleavage 5.0 13.954 1 21
Osa10LNT0059700.1 osa-miR5077 Cleavage 3.5 13.682 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0059700.1 10 hwd1 Physiological trait Lethality nan nan
Osa10LNT0059700.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus