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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0060400.1

GTCCTAGTTCATGGAGGAACATTTTAGGCTAACGACTGAATTTGTGTTTCCCCCCAAAAAAAAAACTATACTTACTTATACATGCAACGAGACAAGATTGTTTGTACCCACATCACAGCAGAGAGGATCAAACCAGACCAGTAAATATGTCGACGTGCCTTAGAACTCAACCAGCCAAGTAAGCCGAAAGAGAGTGATTTCAATGGGACGGAATAGGAATGCGGGTAAACGCCGGTAACTTATCCTCTTTTAGCTGGCTCCAGTGTTTGATATGAAACTGAACAGAGGTTATGCCACTACTAGCAAAGAAATCTTTCACACGGATGACCTGGGGATCATTTTCCAAGCATATCACTTCGATAATCTTAAGGTGCTCACATGTAAATGATCTTTCTGTAAGCTCACCAATGATTCTTTGGTGTATTTCCGAAGTACACTTTGCGAGTTTCAGAGTTAGCTTCTGTAGTTTTGGTGAGTTCTGAAGGAAGACAGTTAGTGCATAGAAGTTTGCATCGAGGCACCATTTGCCGAGAGTCAGGTTGACAACATTGACGAATTCAGGACACCATTGCAAATTGTTTTCGATTTTCAGCTTCAAAAGATTCAATTATAATCAGAAAACTTGCCAACAAA

Coding Potentia
Explanation CPC Score
noncoding -1.15437
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0060400.1 osa-miR1855 Translation 4.5 21.227 1 21
Osa10LNT0060400.1 osa-miR2118g Translation 4.5 18.327 1 22
Osa10LNT0060400.1 osa-miR2118i Translation 4.5 18.327 1 22
Osa10LNT0060400.1 osa-miR2118l Translation 4.5 18.327 1 22
Osa10LNT0060400.1 osa-miR5151 Cleavage 5.0 11.526 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0060400.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0060400.1 10 hwd1 Physiological trait Lethality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus