Transcript

Sequence

>Osa10LNT0061000.1

ACCAAAGACCTTTTAAATTGGTCCCGCTTTACTGAAAGCAAAGGTCAGTTCCAACTTACATGTACTACAATAGATCAGTTCCAACTTCAACCAGACACACAGCCTACGCAAAATAAATGGGAAAGCCCTGGACGCAGCCCGGCATTATAATTAACGCGGATATTCATATTTTACAGCGATACATTCACAGCATCCAGGGCAGGCATCTGTTGACGACGATGAGAAATTCAGAATGGCCTGACGTAGACACCGATGGCGCTGAGGTAGGAATCGCCGGTGCGGGCAAAGAAGCCGACGATGCTGCTGTTGTTCTTGATGGGAACGCTGAAGCGATCCCAGCCGGATGTGTCCACTATTCCAAAGGGTCCATGGCGTCCGCGGTTGGTGACGAACGTGAGGTTGGCTATGCTGTTGTGGCCGTAGTAGGATCCGTACTCCCCGTGAACTTCCGTCACGAACTCCGACGGGCCAAGATTTATCGTGATTTCCTGGCCGCCTCTGCCGCCCCAGGGTCCGGCGGTGTGGGGTAGCTTCTCGCGGTCCCTGTAGGAGAAGCTAAGGCAGTCGACAACCTCGCCATGTTTCACGGTGATGCTTTCCAGGCGCAGAGGAGCTACCGCGATGTCACAGTTCTCGGTCAACTGGGAGCCCCGGCCCATGCCCCATGGTCCAATCTTCACCACCGAGCTCTGCAAGAATCAACTCAAAGTAGAAGACAATGTTTACATATACTGCTCTATGTGTTGTTGAGATAGAGATGGAGATCGAGAGAGAGAAGTGATGACCATTCTTTTGCAGTACGCGGTGCGTAGTAATTTGGGCACAACTTGTTTCGAGATTGATGTGGTTACCAACTGATATATTTCCTGTATATATATGTGGCTCCATGATTGGCCT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.813453

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0061000.1	10	1999076	A	G
Osa10LNT0061000.1	10	1999188	G	A
Osa10LNT0061000.1	10	1999191	T	A
Osa10LNT0061000.1	10	1999273	G	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0061000.1	10	nan	Physiological trait	Sterility	R2309	RG257
Osa10LNT0061000.1	10	nan	Physiological trait	Sterility	C701	C16

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus