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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0061800.1

AAACTACAACGAGCAAAGAGTTTCCTTAAAACATTCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTACACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCTGCTGGAGTTACCTGAGAGCAGCGGAACACCCCACACGCCTCCAGCTGCAAGCATCCTCTTGCAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCAATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCACTTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAGTAATTTGATTGCACCCACATATATCTAACCTCTCAAGGAAACGACATTGATCAACCGTAGCAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTACAATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAAAGCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTACAACAGTTGGCCAAACAGACAGACTTGAGAAGGAAGCAACATCGACCAAATCCGAGAAATGCATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTAGAAGATTTATGCATCGCTGTCCAATATGCTCCAATGCAGCACTTTCCATAATATGGCACATGTTAATTTCCATGTGTTGTAGCATTTTACAGTTCTGGGAAACACGTTCAATACTTCTATCTGTGAATTTGACCGACGATTTGATAATTAGACTTTTCAGCTGCTTGCATCCATTTGCTATGGAAAAAAGGCTCCTGTCTGAGCACTTATTAAGGTTGTCAAGTGACAAATTTTCTAAAGCAGAGCAAGATGAACCAATAGCTTCTAAAGCTTCATCGCCGACACCAAGCCATACCATCTTTAAGGATTTCAAATATTGGCATCCTTTTGCAACAGAGATCATTCCTTTGTTTTCATTAACATGCTTGGACTCCACGGATAGGACTTCCAAGTTATGGCAGTAGGTACCAATTGCATACAGGGATCTGTATGTTATGCAACCATTGCAGAAAGAAATATCAAGAGAGACCAATGATTTACTACGTATCTTTACAAATTCAACCAGTCCTTCGTCCGTCAACTCTTGAACACCACACAGCTTTAATTCACTAAGATTGCATCCCTCTGCCAGAGTAATCAACCCATGGTTTTGAACATAGCCACCCGAAAGCGCTAACGATTGCAGATTCCGGCAACGATTTGCAATTCCCACCAGCCCCTTTTCAGAAATGTGCAAAAACCAGTTTAGAGTCAGCTTTTCAAGCCCTTTGCAACCCTCAATGAGATGAAGTAGCCCAGCATCAGTAAATGAGGTTGGGTTGACACCATCACTGCCATTTTCTTTTTGCGTATCTTCGCTTAGTGTGGAACACTGCATATGTTGCTCATCTAACTTGGGGTTTTCGTTATCCCAACCCTGTGCCCTGCTCCGCTCCGCGGCGGCGGCGGAGGCGCCGGCGGCAATGTAGAGGCCGTGGTCGAGGAAGACATCGGCGAGGCCCGGGAACCGGTCGGCGACGCAGCGGACGACGGCGTCGCCGTCGGGCCCGTCGACGGGGACCCTGGCGGCGCGGCGGGACGCGCGCTCGACGCCGCGCCAGCGGCGGCACACGAGCGCGCAGCTGTCAAGGTCGGCCTTGCCCCCCGCGGCGGCGACGCGGCGGAACACCTCCGCGAGCAGGTCGTCCGGGAGGGCGGCGTTGACGAGGCCGGAAGCGGAGGCCATCGCCCGAGGCGGCGGCGGCGGCTATCACCGGAGGTAGGGTTCCATGGAATCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.948476
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0061800.1 10 2926672 A G
Osa10LNT0061800.1 10 2926174 T C
Osa10LNT0061800.1 10 2926536 G C
Osa10LNT0061800.1 10 2926706 T C
Osa10LNT0061800.1 10 2926874 C T
Osa10LNT0061800.1 10 2926964 A G
Osa10LNT0061800.1 10 2927141 A G
Osa10LNT0061800.1 10 2927143 A G
Osa10LNT0061800.1 10 2927426 G T
Osa10LNT0061800.1 10 2927915 T G
Osa10LNT0061800.1 10 2928202 C G
Osa10LNT0061800.1 10 2928302 C G
Osa10LNT0061800.1 10 2928327 A G
Osa10LNT0061800.1 10 2928615 C A
Osa10LNT0061800.1 10 2930025 C A
Osa10LNT0061800.1 10 2930121 A T
Osa10LNT0061800.1 10 2930403 T G
Osa10LNT0061800.1 10 2930407 A T
Osa10LNT0061800.1 10 2930894 A T
Osa10LNT0061800.1 10 2931473 A G
Osa10LNT0061800.1 10 2932679 T A
Osa10LNT0061800.1 10 2932714 A C
Osa10LNT0061800.1 10 2932969 A G
Osa10LNT0061800.1 10 2933130 C T
Osa10LNT0061800.1 10 2933399 A G
Osa10LNT0061800.1 10 2933426 T C
Osa10LNT0061800.1 10 2933585 G A
Osa10LNT0061800.1 10 2933779 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0061800.1 osa-miR818f Translation 4.5 12.664 1 21
Osa10LNT0061800.1 osa-miR398a Cleavage 5.0 24.83 1 21
Osa10LNT0061800.1 osa-miR1429-5p Translation 5.0 19.805 1 21
Osa10LNT0061800.1 osa-miR1854-5p Cleavage 4.5 10.294 1 21
Osa10LNT0061800.1 osa-miR1428b Cleavage 4.0 12.256 1 21
Osa10LNT0061800.1 osa-miR1428c Cleavage 4.0 12.256 1 21
Osa10LNT0061800.1 osa-miR1428d Cleavage 4.0 12.256 1 21
Osa10LNT0061800.1 osa-miR1428e-3p Cleavage 4.0 12.256 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0061800.1 10 nan Physiological trait Sterility R2309 RG257
Osa10LNT0061800.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus