\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0062000.1

AAAAATTAAAAGAAATGGTAACTAATCCTTTTGGAAAGGAATGGATCTGCATTTGCATGCAGAGAAGCAATGGTTAAAGTTGTTTACAAAATTCTACACAATGGTTCTCATTACATAGCAAAAGAAATACTCCCTCCTTCCCAAATTGATCATCATATATGTTTATGCACCAAGACCAATGATAATTTAAATCACATCAATCAAGATACCATGCACACATTCTCCCACAATACATGCATCGATTAACACCATGCCAATTACACCTTAGCATGCACACATTCTTCCATGTTGTATTAATGGTATTCTGATGAAATCCGTGTCCATGCGGTTATATGATGATCAATTTGAGAAATCTTGAATTTCATAGTGTGATGATCAATTTGGGAAGGAGGGAGTAACGGAATGGTTACCATGGAAGACAGGGTTGTTGTGGAAGAAGTTAGTGCTTGACACTTGCCTCAACACAGTCATTTCCTTACAGTGCTAGCTCTGCATTGCCAGGAACTAACACATACAACAACCCAACAAGTCAGAGGCTTCATATATTTGTATCCTTTTCTCTTCATGCCAATATACATATCTCAAAAGTTTGAGTCCCCATGAGGCTCTGTTGTTCCGTCTAATTCATCTCTTCATGAAAATGATCGGTTGACTTGCTCTCATTTCACCCAAGAGCCACCGGTGTCTGCCCAGCCATTAGTGAAAATGGAAAGTGATTGAAATTAACTGTGCATTATGCCTCTCTATGAATGAACAATATTCTGCCCCGTATGCCTCCTCTGAACAGGAATGGATCTCGTGTCGGTGTGGGACCGAAGCGAAGCCTCGAAGGCCAAAAGGGGAGGAGAGGGTGGGATGTGGCGCTGGGGGTAAGGGCACGACATTGGTCAGTTGAGATCGGGGAGTGGCGTCGGCAGCGTGATCTGGGCAGGCGTGGATGCGGGCGCTGGCGGTGGCGGAGAGGAGCAGATTAGCGATGAGCGTCGACGGCAGGTGATGCGGGGTGGAGAAACGCCGGGGACGGGGATGTGGGGCGGGGGACTCCACAACGGTGGAGGTGGATATGACGACAACGCTCGATCCAATGATGGGCGCGCGGCAAAGGGGATTCAGCGACGGTGGAGGACGCGGTATCGGTGGCGGCGATCTAGGAGGAGGTGCGGGACGGGAGGGAGGTGTGGTGCCGCGGCGTATTGCGGAGGCCGAGGGGACTCGCGACGAGGAGGATGAGCCGTGGCGAAGGGGGAGCGGCGCGGCGATGTGGGGCGGCGCTAGCGTGTTTTTTTTTCCCGCTGATTGCGGATTGCGAGCAATCCGTAGGAATCGCGCGTGGGTGGTGCAGAGGGA

Coding Potentia
Explanation CPC Score
noncoding -1.24973
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0062000.1 osa-miR394 Translation 5.0 21.838 1 20
Osa10LNT0062000.1 osa-miR1436 Cleavage 5.0 6.367 1 21
Osa10LNT0062000.1 osa-miR1439 Translation 4.5 5.985 1 21
Osa10LNT0062000.1 osa-miR1848 Cleavage 5.0 23.302 1 21
Osa10LNT0062000.1 osa-miR2926 Translation 4.5 17.854 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0062000.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0062000.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0062000.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0062000.1 10 nan Physiological trait Sterility R2309 RG257
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus