>Osa10LNT0063100.2

CTTCTCTCTTTTTCTAGTTCTCTTCCTCTCCCTCACGCTTCTCCCCAGCGCCGCCGCTCACACTGCCGCTCCTCCTCACGCCGGCCGCTGCTCCCTGCCTCCGGCAGCCGCCCCGCAGCCGCTGCCGGCCTGAATCGGTTCCGTGGCTCCTCATGAGTCTACCCCCCAAGCTAACCGTAGCCATCAACCCCTCACCAGTCTCCAATCGATTCTGCTGCTGGCTACTGCTCTCAATGACTGAGATTGAAATTTCCCAACCCCAGCGCCCCTGATTCAAGCGTGGCTCAGACCAGCCGTCTCTCCCTCCCCGAGCTCCTCCTCTCTGATCCCCTTCTATCCCTACTTCTGTGACGTGATCTGATTGGTTGTTCTCTTAGGTGGTAATCTACGATGAATTTTTATACTTGTGAACAGGTTCTAATAACCAACTGGATGGTGCTATTCCTGCTATCTGTAGGTTCTATATTATTTGATTTGCTATAATTGGATGATGACTATATGCTATGGATGAATGAGTGAATGCATGCTCAAATGAATCAAGTATGCGCATTTTTTTTAGTACTGATATTGAAATCACAAAAACAGGATTGGTCCTTTTTTATTCTTATGCAATGGTAATCAAGATACTGAATTTTCTACATGCCACTATACTAGCACAATCAGATCCTTATATCCTTATGCTGAGTAGTAATTCAGAGAATTAATTTGAATTCCTGCATACCAAATGCATCATAGTAATATGACTAAAATGATCACATGACCTAAAAACTATGCATCTTGATTTTGTTGTCAAATATACTGACTACTAAAATAACTGGTAATTAATTGTGTTCTATGTTATTGGTCTTAGCAAAGTTATGCTGATCAACTACTAAGGTTCAGATCCTAATGTTATGCTCTTCTAGGACTTATGATTAGGACTCATAGATTTCTGTTTATGGATCTACATTTATACTAAAGATGTACTTGTACACTTGCTATTCATCCAATCCTACAGATTCGGTATTACTATATGAAGAACTAAATACATTGGTGAGTTTTGAGACTGCTAGTCTGCTAGTATTTCTCACTGTGGCATACGATTTATATTGATTAATACTTACAGAACTAATGTATGTCATGCTTTAATCTAGAATCATATGCTCTAGATGCTCTGCTATAGAGACTTATAACCCTACTCATTAATTCTAACTATTTATAATTTCAGGATTCACCAAAGAGATGCATGTGCAGCTGTTTACCTAAATGCATTTACGTAATAATTCTAGACAAACTAAAATGTTTCTTGTTACTAACCCCAAATAATTATAAACTAGAATTAACCTATATTTACTTTTCAGTTAAATAAAAATATTTATGTCCTACTAGTTGCACTTCCTACTCTGCAGCTCAAATTACTTAATATTCTTGTTCATCTTCTAATGGATGCAAATGCAACTCACAACTCCTACACATACTAGTATATGCATCACTCAAGAATCATGTCATGATATGATTGTACTTTCAGTTTAATCTCTTGATTACCTGCCATGATTTTAGGTGACAATTATATGGTTCCCTTCTCTGGTTCTGCAGCTACTCTTCTGGACTCTGATTCAATGGTTCTCCCGATGGAACTGTGATTTCTCCTCTTTGAGCTGAAGCACCACCTGCTCCTCCAGAAACTGAAACCCCTCTCTTCTTGAAGCTCAGGACTGAACACCTCTACTTCATCCAAGAACTAAATACCTTTGCTTCTCCTTCTTCAGATTTGGTTTCTCTCTCTCTCTTTCTTGTTGTTTCCCTGTGGATAATAGGAATGAGATACGGTGTAATTGTGTTGCTGGCTACTAAGCTACTGCTCTGCTATTTTTCTCTGTTTTGAGCTGGTTTTACAACCGAACTGCTGGCTGCTACTACTGCTGCGGCTGAGGATGCTGCTTGGGGTTGTTTTCCAGCCGATGCAACCGAGACTGATTCACAGATAGCTGGTTAATATATGTGTGAATTTTTTTTGTGAAGGCTGGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGTTTGATCGGTGGTGTAATGTGGGATTTCACTAAATTTTTCTATTTAGATAAATTCTGATACAATTAG

Explanation	CPC Score
noncoding (weak)	-0.905331

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0063100.2	10	5253446	T	G
Osa10LNT0063100.2	10	5254735	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0063100.2	osa-miR5527	Translation	5.0	22.439	1	21
Osa10LNT0063100.2	osa-miR172d-5p	Cleavage	4.5	12.874	1	20
Osa10LNT0063100.2	osa-miR415	Translation	5.0	14.668	1	21
Osa10LNT0063100.2	osa-miR528-5p	Translation	4.5	5.084	1	21
Osa10LNT0063100.2	osa-miR814a	Translation	5.0	15.964	1	22
Osa10LNT0063100.2	osa-miR814b	Translation	5.0	15.964	1	22
Osa10LNT0063100.2	osa-miR814c	Translation	5.0	15.964	1	22
Osa10LNT0063100.2	osa-miR1879	Cleavage	3.5	10.721	1	24
Osa10LNT0063100.2	osa-miR2093-5p	Cleavage	5.0	12.266	1	20
Osa10LNT0063100.2	osa-miR2093-3p	Cleavage	4.5	12.768	1	20
Osa10LNT0063100.2	osa-miR2101-5p	Cleavage	4.0	15.916	1	22
Osa10LNT0063100.2	osa-miR5073	Translation	5.0	9.73	1	23
Osa10LNT0063100.2	osa-miR5078	Translation	4.0	17.417	1	21
Osa10LNT0063100.2	osa-miR5522	Cleavage	4.0	14.203	1	21
Osa10LNT0063100.2	osa-miR168a-3p	Translation	4.5	15.826	1	24
Osa10LNT0063100.2	osa-miR5500	Translation	4.0	18.626	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0063100.2	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0063100.2	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0063100.2	10	qRRE-10	Resistance or Tolerance	Other soil stress tolerance	R2174	R2194
Osa10LNT0063100.2	10	qPBN-10	Morphological trait	Panicle/flower	RM216	RM311
Osa10LNT0063100.2	10	nan	Physiological trait	Sterility	R2309	RG257
Osa10LNT0063100.2	10	nan	Physiological trait	Sterility	C701	C16

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus