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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0063500.1

GACAGCCCACGAGATATTCCAAGTGCTCACACAAGTTCCTAGTCTTCACACCTCCCCAAATCTTCTTCTCTACCTCTCAATCTCTCTTTCTCACAAGAATTAGGCTCTAGATTGAGTGGAGAAGGCAAGAAACACTTGGGAGAGGCTAGCAACAGCTCTAGGTTTGAAAAGTGAAAGTGGAATGGCCAAGGAACGAGCTGGAAACGAGCTGTATATGTATAACGGCTAGGTGACGACATCTAGCCGTTACTCATAATTTTGAACTGGAAACTAGACAGGAAGTTCCGGACCTGGAAGACAGGAACTTCCGGACTACACTTAGGAAAATCTTTTTCACAAGACCGGAACTTTTGGACCTGGAAGACAGGAAGTTCCGGACTTGCACTTTTGGACAGATGGAGTATATGCAAAAAAGACTCCTAGGGAAACTTGACACTTGGTTCACACTAAGAGCACTTGACATATCTCAGATCATCACCTGGAACCCCTCTTAATAGTACGGTTTTTCCTAAAAACTCGATTTCAAAAGATAAACTATCCTATGCACTTCTCGAGTTCCGGTCCGCTTTGATTTTGTACTTTTGGGGGGTCTCCAAGCATCCATCTTCCACACCTTTGGACTAATGCACCTGAAAGTTACTCAATGAACTCATTAATCCCTTAACCACATTTGTCATGAATCACCAAAACCCACTAGGGGGATTAATGCACTTTCAATCTCCCCCTTTTTGGTGATTGATGACAACATGGTTAAAGCTTACAAAAGATTGAAATAAATTTTGTTTTGAATAGTTAGAGGTGAATGAAACTCCCCCTTAGTGTATGCATATGGAAGATATGAGTGAAGCTCATATGCATATTTATAAGGGAGCAACCGAGGAGAGTTTCCTTCATCTCTACTCATTCGTGGGATGCAAATAAACAGTAAGAATAGATATGATATGCAAAAGATACGACATGGTGAGCATTCAAAAGGATAAAATCAACATCACATCACAATCAACAAATAAGACACTAATAGCATAAATGAAGTGCAATATATATAAAGAGCAGCTAAGAGCATCTAACAGACATTACATCCACACAAATAGAGAATTATTACATGTCCATAAGTTCTTAAGAGAAGAGGCCAAAGGACTGCCAGGTCCGGAACTTCCGGATAAAAAACCCGGAACTTCCGGACATGTTGACAGGAATAAATAGCGAGGGAGCTGCCAGGTTCGGAACTTCCAGATAAGAGGATCCGGAACTTCCGGATAAACAGACGGAGTAGGCAGCAAGCAGCAAAAACAATATTTTGACCCCCTTCGATTGCAATTTTCTCCCCCTTTGGCATCAAGGCACCAAAAGAGACAAAATCACAAGGGAAGAAGAGGATCAAGCCTCATCATCATCGCCATCAGAGGGAATAATCTCGGTGTCGCCGGAGTGAGGAGAGTCGATGTCTTGCCCGGCGGCGTCCACTGCCTCATCTGGATCTGTAGGTACATTCTCAGTAGGTGCATCGGACTCCTGATCATCACTGCTCTCCTCGGAGTGGGAGGACTCCTCATTGAAGAAACGAGAAGTGCCAGAGGGACCCTCACTACTAGCAATGTCTCGAGCAGTCTCATAAGCAGCAAAAGGATCAACAAACTCCTTATCATCAGAAATGTCAGAGACATCCTTGCCTGCTGCAATCCAATCTTCCTTCTGACGCCTCTCTATCTTCTTTACCTTCTTAGCTGTCTTGGCACACATACAAAAGATAGCCCTGAGAGCCTTCTTTATGGGAGAAGAAGACTCAGAACGCTGTGGTGCAGCAGAGGAAGAAGGAGCAGCTGAGGTAGAAGCACGAGTTGCCCTGGTAGAAGGAGTAGCTGAAGTAGAGGGAGCATGAGGTCAAAAAGGCTTGTGTTGATTGTCCTTGAAATAACAAATCCCAGTCTTGGCCTCAACCATCTTCATGATATAAGGAGCATAAATGCAGCCCCTCCTTGGCTCACACACTGTCTCATAGATCTCACTCCAGATAAGCTTCATAATGCTGAAATCTGGCTTGTTGTAGCGCATGCGACTGAGGAGGAGCGCATGCCTACCTGGAA

Coding Potentia
Explanation CPC Score
noncoding -1.1711
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0063500.1 10 5654186 G A
Osa10LNT0063500.1 10 5654435 A G
Osa10LNT0063500.1 10 5654449 A T
Osa10LNT0063500.1 10 5654495 T C
Osa10LNT0063500.1 10 5654573 T C
Osa10LNT0063500.1 10 5655026 T C
Osa10LNT0063500.1 10 5655202 T C
Osa10LNT0063500.1 10 5653732 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0063500.1 osa-miR396f-5p Cleavage 5.0 18.053 1 22
Osa10LNT0063500.1 osa-miR5144-5p Cleavage 4.0 15.714 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0063500.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0063500.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0063500.1 10 qRRE-10 Resistance or Tolerance Other soil stress tolerance R2174 R2194
Osa10LNT0063500.1 10 qPBN-10 Morphological trait Panicle/flower RM216 RM311
Osa10LNT0063500.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0063500.1 10 nan Physiological trait Sterility R2309 RG257
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus