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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0064600.2

CATAGTTTGCATATCATCATATGGACGAGGAAGCAATGCATCTCTTTTAAGCACGACATTGACAACAACTTCATAGAATTCAACACCTAGAGGTTGACCTCCCACCAAGGAACTTGGATCAATTGATACAATTGTTGCTTTAGCCACAGGGGTGTCAGATCTCAAGACAGCATATAAGATAACATCTTTACCAACAAGATTTTCTCCTTCAGCAATGGTGGCTTCATGGCTTCCTGTGGCTGTGTTTCTTGAGGGCACCCTTGGCGTTATAGCTTTTTTGCGGATAATAAAGTCATCACCCGATAGGATATTATCCAAGTGCCTACTGGTAGGCTCAGCATGAGGCTCCTCCAGCAAGTGCCTATTGGTAGGCTCATTAGGATGCAGCTCTTCAAGTACTGGACTCCTTGGGCTCTCAGCATGTCGAGAATTAGAAGCATGATGGGAACTTGTTTCTATATTCTGCACACCTTGAGACATAACCATATGCTCCATTATGTTAAAACGTTGTTGCATGTCGTCCATGCGTTTATTCAGACATACAACTTCTTGTTTGGTCTGTCGATGAGATTCTATTTCTAGCTGAAGTCTTGTTGGCATTCTGCTACGTGTTCCTGGTGTGCCCACATCCTGAGGAGTTGGTCCCTTTCCTAAAACACGAACACGGCCTCTTGGTTCCTTAGTTCCACAAACACGTGAATACAAATCGCCCTCCTGGATTGTTTTGTTCTTCAACTCTGGGTTAACTTCTGCAGCCTCTTTTAGCATTTCAACTGTTTCTGCAGCCTCTGGAATAATTTCTCCATTTTTTCGTTTGTGCGTTTCAACAAAGACTTCATCCCTTCTAGGAGGACGCCCAGTTTTCACACCCATGTCATGGCCAACACGAGCGTGGCTCTTGCTACCAGCTGTATGTAACATGCGCAACATTCCGCGATTTGCCTTGCCTCTTATGGAGCGGGCCACAGCTTCTGGAGATCTCCAATGGTTAATAAGCCACTTCCATTGTGCCTCGTTGACTCTTAAGTCACGTCTGTCCATAAGTTCCTCATCAGTCAGATTTGCATCAAAATGTTTCTTCTTCAAATCAGCCTTATAATCCTTCCATATCATATGTGATGTCTCCAACACAAAATGTAAACCATATTCATTGATCTCATAATGTTTCTGTACATCTTCCCATACTTTCAGCTTGTCTTTGACGTCAACATCTCTCCAATCACCACATGCAACAGGTATTTTCTTTCTCACAAATGTCCCAACAGTAGTGGCAAATTCCTCAGAATCAAGCCCCACCGGCTGACCAAATTCGTTGAGAGTAATTTTGATTTTAGCTTCACCCACCCTTGAAATTATGTTGAGCTTTTGAGTGATACCCCTTCCTTCCTTCTTTTTCTGCTGAACTTTTTCAAGTTCAAGAATTTCTTCTACATCTACTTCATTGTCATCCATGGCATCTTCTTCTGGTTGGTATTCAGGATCATCGCCAACATTTTCATCTACATTTTCCTCTAGGTTATTTCTTGACCTAGACCGCAAGTTATGATCTCCACATGGCACCATGTTTCTACCATCAGTTACCTTAGGTATTTTCTTGGGTCGTTGTTGAACATGCGTATTGCTGCCCATGGGCGGGAGGTTTAGAGATTGTAACATTTCATTGTTTGCTGCTATGACACCTTTGCGACGTATTTCATAATCAGTAAGAGTGTTTTCCTTATTCTTTCCAACTGCCATTCCATTGATAACCTTTTCTTTAGACCTTCCTCTTGCCTTTTCCATTGTTTTTCGTCTTAGGTTTGTTTGCTTCAACAATTATTCCATCTATGTCTGTCCTAACAAAAACAGTTTCTTCAACAGAGATATTCATAGTTGAATTGGGATGCACATCAGGCAAAATGATGGATACTTCAGTGTCATTCCCCAAATCATCTTTTTCAGTTTCACTCATATTATATAAGTCACGTGGTTTTGATTGCCTAACAGCAAACCATTCAGTATCAACAGGATCTTGAACATAGTAAACCTGAATAGCTTGAGATGCTAAAATGAAAGGCTCATCTGATATATTGTCACCGGTATTGAATAAATGCTTGAAATTCACAGTAGTTATCCCAAACTGATCAGTCTTTACCCACTTGTCCTGTATGCGATTATCAACCCAATCACACTTGAAGAGCACTATATTACCTCTGTTGCTATAATTCAACTCAATAATTTCTTTTATAATACCATAATAGATCTTGTTTCCTACTACGCGGCAATCATTATTGCCTCTTTCAAAACATGTGGTCTCAGCCATTAGAGACACTCCACTACTTTGAACAGGCCTTCCCTCATCATAAGACTGTGTATGAAAGTTAAAACCATTTATGGTGTAGCTGTTATATTTATTGGCAGCCATGATGGGCTCTTTAGCTAAAATTTTTATCTCTTCTGGTTCATCATCACCCATCTCAGTGACATGCAATCTAAACCACTCATGAAAGGTTTCATGGTGCACACGGTCAATTTCACGTTTGTTTTGAAGGCCAGTTGAGGAAAGATAGTCAATGTGTTTGTTCAAATAAGGATCGATATTGTCATAGTTGAATAAGACATATCTGTGTGCCTGCAACCAATTTTTGTGGTCTAAAGCCACGCAACATTTGCCAGCTAACCCTCGCCCAATGTTGCGAAAGAAAGGAGTGGTACTCTGAACTTCCATGGGCAGGCCTTCGTCATTCCTAACTCGCCGAGTAAAACGAGTAACACCATGTAAATAACGAGAACAGAATGTAAGACTCTCATCAAATAAATAGCTCTCCGCAATTGATCCTTCGGGATGACTTCTAGTGCGAACATACCCCTTACATCTCATCAAAAACCTCTCTCCAGGGTACATGTTGCGAAAATGTACCGGACCAGCTATTCTTGCTTGAGCAGGTAGATGGACCATCAAGTGTATCATAATAGTAAAAAATGAGGGTAGGAATATTTTCTCAAGAAGACATATGGTCTCAGCTATTTCTGCCTCTAGTTTTTGCATATCACTTACACGGATAACAGGCGAATATATTTGCTTAAAAAAATTGCTCACACGAATCAGTGCTGCACTAACATTTTCTGGTAATATCCTTCTAACAGCAAGTGGAAGCAATTGTTGAAGGATAACATGATTATCATGGCTCTTAAGTCCGATTATCTTTTTCTCATTAACCTGGACATTGCGCCGTATATCAGAGGCATAACCATCAGGGAACTTAACTCCATTTAACACTTTGCAAAACAATTTCTTCTCTTCAGAATTCATTGAGTATGGGGCTGGAGGTAAATAAAATTTATCTTCTACTTCAATAGGATGAAGATCACTTCTTATGCCTAGAGCTTGAAGGTCTAACCAAGAATTTAAGTTGTCTTTTGACTTCTTGTCAGTACCCAAGAGTGTATTGATTATGTTATCACATACATTTTTCTCAATGTGCATTACATCAAGATTATGACGCAAAAGCAAGTCCTTCCAATATGGAAGTTTGAACCAAATAGACCTTCTTTTCCAAATATTAATTGGCTCCCCCTCCTTACGCTTTCTCTTTTTCGTTACCTTCTTTCCAGATGGATCCTTCCCAAAAGATGTTTGCATCCCTTCTGTCTGCTTCAAAATTTCCTTTCCAGAAAGTGGAACAGGTGCTGACTCAAGCTCAACAACACCATCAAAAGAATCAGCATCAAATCTAAATGGGTGGTTTGCATGTAGAAACCTACGGTGTCCCATGTAAGAAGTCTTGCTGCCATTTTTCAATCGAAGAGAGCGTGTAAATTGATGGCACTCAATGCATGCTCCCTCACCTGAGGTAGTACAACCAGCCACATACCCAAGACCAGGATAATCTGAAATGGTGCATAATATAGCAGCACGCAACTGGAAATACTCACCCTTGGAGGCATCAAAAGTTCTAACACCATGGACAAACATATCGTACATATCATCGACTAGTGGCTCCATAAAGACATCCATGTCACTACCAGGAGCATATCGACCAGGAATTAACAAAGAAATTATGAAGTTTGGTTGCTTCATACAGATCCATGGTGGAAAGTTGTATGGAATTATAATAACAGGCCAAATGCTATAAGAAATATTCATGGATCTGAATGGATTAAACCCATCGGTAGCTAATGCACATCTAATATTGCGAGGATCAGAGGCAAATTCTGGGTGCTTATGGTCAAAATCCTTCCAAAGAGGAGAATCTGCTGGATGTCTAACCAAACCATCTTGTGTGCGCTCTTCATCATGCCATCTTGTTAGAGCTGCTGTTCTAGAGCATGCAAACAACCTCTGAAACCTTCTCTTTATTGGAAAATAGCGAAGAACTTTATTAGGAACCTTGTGTATGCGTTTGCCATTTAGACTCTTGTTTTCTGACTTCCATCTTGAGGTTTCACATTTTGGACAAGAGTTGGCATTAGCATCATCCTTCCAATAAAGGATGCAATCATTTTTACATGCATGAATACTAACATATCCAAGCCGTAAGCATTTCACTGTTTTCTTAGCTTCATTGTAGTTCTTTGGTAGTGCTGACCCTTTAGGGAAAGCTTCAATAAGTAGATTTAGTAATAGATCAAAACTCTTATCAGACCATCCCCCAAGCAATTTGATGTGTAGTAGTTTAACTATGAAATGCAGCTTTGAGAATTTATCACACCCTGGGTACAGTTCTTGCCCATAATCATCTGACAGCATTTTAAGAGCATTCAGATCTTCATTTGTTACATCTGAATTACCCTCATCCTCAAATTCCCCCCTATCATCTAAGCCACATGCCAAGTCTCGAAGCAAATCAGAGATGTCATCATGTTCACTTGACTCCACATCCCCAACCTCATCATACTCAGCAGAATTCACAAAGGAGCTACCTTCTCCATGAAACATCAATGGTTTGTACCCTCGTAGAAAGCCCTCACATATCAAATGCTCATGAACTTCGCTTTCATCTCTCCAGAATGAACCAGCACATTTTTTACAGGGGCATTGTATTTTGTTGCCTACTGCTGAACTAAATTCATGTTGTAGGAATATGTCCAGCCCTTCTGAATATTCTCTAGAGTGCCTAGGCTTATCCATCCACTGTTTATCCATGGTGCACCTCTGGTGTTTGCTTGTTGCCAGCTATATGGCTGTTTTCCTCAAGTAAAGTTCAAACTTCTACCATGGAGATCCCCTTGGTCCTCTGATGCTTGCCTTGTTGATGACCTTGGTTAATAAATTCAGCCCATGTACTTCCGCGACACCAACTGGTTCATTCGAACAGCACTCAAGCCCAAGGGATAGCAAGAAGAGTGACAGCGGAGTGGACACGCGAGCGTGGGAGGGTGCGTGGGCGCTGGTTCCTGGAGCTACGAGCCCTAGGAGTCACGGAGTGGTGGTGGAATTGACAGGGCCGAAGGGGACATCTATTCCTCCTGACCTGGAGAGCTGCAGGGTTGATGCGATGGGTGGAGCGATGCGGCGGCGCGATGGGGAATGGCGGAGGTGCTACGGGAGGCAGGGAGCGCGGCGCGATGGGAGGGGAGCAGCGGTGAGATGGGGAGGGCTGGCGGCGCGACGGGAGGAGGGGACTAGCGGCGCGACGGGAGGAGGGGAGCAGCGGCGGCGCGATTGGAGGCGTGCGTGGGGGAGGCTGGGGATGGGTA

Coding Potentia
Explanation CPC Score
noncoding -1.14117
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0064600.2 osa-miR5528 Cleavage 4.0 15.765 1 21
Osa10LNT0064600.2 osa-miR5532 Translation 4.0 14.173 1 22
Osa10LNT0064600.2 osa-miR5793 Cleavage 5.0 7.684 1 21
Osa10LNT0064600.2 osa-miR6248 Cleavage 3.0 6.835 1 21
Osa10LNT0064600.2 osa-miR166d-5p Translation 5.0 20.76 1 21
Osa10LNT0064600.2 osa-miR395f Cleavage 4.5 13.34 1 21
Osa10LNT0064600.2 osa-miR156k Cleavage 4.5 5.678 1 21
Osa10LNT0064600.2 osa-miR172a Translation 5.0 13.118 1 21
Osa10LNT0064600.2 osa-miR172a Cleavage 5.0 11.188 1 21
Osa10LNT0064600.2 osa-miR172d-3p Translation 5.0 13.118 1 21
Osa10LNT0064600.2 osa-miR172d-3p Cleavage 5.0 11.188 1 21
Osa10LNT0064600.2 osa-miR390-3p Translation 5.0 12.96 1 20
Osa10LNT0064600.2 osa-miR1432-5p Cleavage 4.5 11.95 1 21
Osa10LNT0064600.2 osa-miR1442 Translation 5.0 16.077 1 20
Osa10LNT0064600.2 osa-miR1855 Translation 4.5 6.931 1 21
Osa10LNT0064600.2 osa-miR1873 Translation 4.5 9.957 1 24
Osa10LNT0064600.2 osa-miR2055 Cleavage 4.5 14.148 1 21
Osa10LNT0064600.2 osa-miR827 Translation 5.0 16.419 1 21
Osa10LNT0064600.2 osa-miR2099-5p Cleavage 4.5 17.061 1 22
Osa10LNT0064600.2 osa-miR2870 Cleavage 4.5 12.016 1 21
Osa10LNT0064600.2 osa-miR2873a Cleavage 4.0 22.481 1 24
Osa10LNT0064600.2 osa-miR2921 Cleavage 4.5 8.298 1 24
Osa10LNT0064600.2 osa-miR2928 Cleavage 3.5 6.502 1 20
Osa10LNT0064600.2 osa-miR5491 Translation 5.0 15.813 1 21
Osa10LNT0064600.2 osa-miR5498 Cleavage 5.0 11.762 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0064600.2 10 nan Physiological trait Sterility R2309 RG257
Osa10LNT0064600.2 10 nan Physiological trait Sterility C701 C16
Osa10LNT0064600.2 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0064600.2 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0064600.2 10 qRRE-10 Resistance or Tolerance Other soil stress tolerance R2174 R2194
Osa10LNT0064600.2 10 qPBN-10 Morphological trait Panicle/flower RM216 RM311
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus