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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0065200.1

AGACAAGAACATTTTGGTAGACTTTGTTGAATTGACCAGATACATCCATTACCAAGGAAATGAAACCGAGAATATCAAGAGATACATTGAAGTCACCATGTAGTAAATTAATTGCCTGAAGCTTTCGTTGTCGATGCTGTCAACTTGACAGTTAAATATGATTAGGACTACGTGCTTCGTTAACATTAGTCGTGGACAATGGTAGCTCAAAAGTTTTCTGCTTCTCAAAATTGTCATCTTGATCAACTTGATTGCCATGGTCCTTGTTCTTGCCCCAAATGAGAGCATACAGGCCCACAACAATAATTATTGCACCAATCACCCTTCCCAAGGTAACAACCTCACAAAGAATGAAAGATCCCAAAATAGTCACTATAATCATGCAAAGAGGGCTAAAGGCAGTGACAAATACGGGACCCCTCTCCTTTATAACCATACCTTGCACATAATAAGCCACTCCAGAACACATTATGCCAGAGTAGACAGCTGTAAAAAGCCTCATATCAAAGCCAATTAACCAGGCCTTGATATCACGCTCCATGACTAGGGCGACCGCCCCACTCTGTGCTACACCCATGGCGCATATCAGTGTGGTTAGAGAAAGCTCTGCTGGGTAACCCCTCAGTGTGTATGATTGTAGAATGAAGAAGGCAGACCAGCAAAAGCAGCTTAGCAAAATCATAAAGATACCCATAAGCCAGTGGCCATTATTGTGGTCACTACTATCAGAGATGTTGTGATTGGCATTCTTGGTCCACGGAAAATTGATGACAGGGCCCTTGAAGAGTATCATAAGCATAGCTCCCCCCACTGTTATCAGTGTGCCCGCTATTTTTGCCTGACTTCGTCGTTCCTTGATGCTTATTCTCTCCATCCTAGTTATGTTCAACAAATTTTTATAAAGCATTTTATTATTTTGAGGTAAGATAATATAAAACTTATAGAGCTATTGATTATATTTTTGTTCAGAATAGTATTATAATACCCTATATCCCACCTTCATAACTCTATCCATAATCACTATTTAGGTCGGGTTCACTTGTGCATATCAAACCTATAAAACTTTTGTCGTTCTATATAAAAAGTTGGCCCGTGGTTACTATGCTTTCAAGAAAAACAATCTACTCCTCAAATTTCGTTCGTCGATGCTAAAATTGGATGAAACACCTATCTCAATTCTCAAAACGGGGTATAACTCATCTCTCCAGGTTATTTTGCCTGTGATCTTAACCCGTGGTGTCACAAGTACATATATGCTAGCCTATCTCTCTACTTCCATGATCTGGACTGTTTGCATAGTGGTAATTGTGTTTTACTAGGGCTAGCTACATGTGCTAAAATCAATGAGGTCACCAGAAAAATCGTTAGGAGAGGATTAGATTTTAAAGCACACTGTTGCCTAGCCCTTCCACACGGTAGTCCCAGATGCATAAACACCACCCTGCTTAAAATTTTGCCTGGACTTCATGCAAAAGACATGTAGATGAATTTATTGAAGCATTATGTATCAGGGCTAACTAGACATGCATGGTGACTAGTGTGGTGTATGGGCCACAAATACTAGTGTGATAATACAAATCTGACGATTCACCTCAGTATGATGGCATTTACAAACGTTACAGCAGGTAATATGTTGGTGAGTGCTGATGAGAAGCTCGCCGACGTGTTCTTGGCTCCCATATAGAAGAAGTTTTGGTCAAGCACAGGCTCGAGTAGTCCCAGAGCCATAATCTTGAAAAACACAGAAAGCGTCATTTTGGGCCTTGTTTTCCTCTCGAACCAGAGCGCGAATGGTGCCATGACGACGGCGGCGACGGCATTCCGGTATACGACGAGCACGTAGTGGCTCATGCCTTGCCGTAGCGACGCGACGGAGATGAGGAACAGCCCGGCGAAGCCGAACTGTAGGAAGACCATCGCCATGTATGGCATGGCCTTCCTCCATTTCCCATTAAGTCCCATGCTATCACCTTCTTAGGCTGGCCACGGGCTAACTGCCTTCCTGTATAGCTCACTCACGCCGCTCTGGCCTGCCTGTCTGCCT

Coding Potentia
Explanation CPC Score
noncoding -1.16188
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0065200.1 10 7813436 C G
Osa10LNT0065200.1 10 7813768 C T
Osa10LNT0065200.1 10 7814095 A C
Osa10LNT0065200.1 10 7814283 A T
Osa10LNT0065200.1 10 7814369 C T
Osa10LNT0065200.1 10 7814404 C G
Osa10LNT0065200.1 10 7814968 C G
Osa10LNT0065200.1 10 7814985 C A
Osa10LNT0065200.1 10 7815538 G A
Osa10LNT0065200.1 10 7815903 A G
Osa10LNT0065200.1 10 7816036 T A
Osa10LNT0065200.1 10 7816087 T C
Osa10LNT0065200.1 10 7816179 A G
Osa10LNT0065200.1 10 7817107 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0065200.1 osa-miR5512b Translation 4.5 9.727 1 21
Osa10LNT0065200.1 osa-miR435 Translation 5.0 9.253 1 20
Osa10LNT0065200.1 osa-miR1320-5p Cleavage 5.0 13.027 1 21
Osa10LNT0065200.1 osa-miR2055 Cleavage 4.0 9.323 1 21
Osa10LNT0065200.1 osa-miR2875 Cleavage 3.5 15.554 1 24
Osa10LNT0065200.1 osa-miR2923 Cleavage 4.0 10.951 1 22
Osa10LNT0065200.1 osa-miR5490 Cleavage 5.0 13.431 1 21
Osa10LNT0065200.1 osa-miR5512a Translation 4.5 9.727 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0065200.1 10 nan Physiological trait Sterility R2309 RG257
Osa10LNT0065200.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0065200.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0065200.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0065200.1 10 qPBN-10 Morphological trait Panicle/flower RM216 RM311
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus