>Osa10LNT0065900.1

CCATAAATCATCAATTATGATCAAATACCTGCAAATGTTTCACATGCAGCATATAAAATAAGCAAATTAGACTAAGAGTAAGTAAGGACTACACTCTCCTTAAAAACAGAGCAAATAGCACAAAGGAAAGACTCATTCTCAGTTCATTGCTATGAACATTTTGGACAGAGCAGAACTGTTCCAATTAAGTTTTTAAGAGGAGATAAGTTGTAGATTACTCATGACCAATATATAACCATCCATGAGACATTACATTGCAGAAACAAAAAAAAAAAAGAAGAAGAAGAAGAAAAGGTATCTTTTGTCTTGTAGATTCTCCCGCAGATTATTGAGAACACCATGTATCTCACAAGATGGAGTAAATGTCTCCTTGCCCAGTTGTGAGAGTATATTACTGAGGATCCTTACTATATCTGGTTTCTGAGAGATGGAGATAAATGCATGACAATCAAATTGCCCTCCAATCTTTTTGTACACTTCGTTAGCAAGTGCTGTCTTGCCTAGACCACCAATTCCCAAAACAGACACCACCATCAACTGTTGATCTGCACCCATAAACCATTTGGTAATCTCATCCCTTGGACCATCCATACCCACAAGGGCCTCTGCATCCGCATATAGCGCACAGAGGCGAGGATCAATGGCTGTATAGTCAGATGTAGAGATACTTGCATCAAGCTTATACCTTTTGTGCCGATGGCTCATCTCCACCACACGTGTTTTCACCTCATTTATTTGATTGGCCATGCGATTTTGTGTTCTCATCCTGTTGAGACGAAAAATGATCTTCGAAATGAACCCAGAATTGCTGTCGTCCTTAGTGAGATGATGCATGGCCTCATCAATCCAGTCCTCAATCTCATAAGCCATCTCTCTTACTTAGTTCATCCACTCTTTTGTGAGTGGATCGAGGTTGTCTTTGTCTGCAAGTATCTCCAGGAAAGCTTTCATGGTCCTGAGCTCATCCCTGAGGAAGCCCACCTCCTTAGGAATGTTGCTGAACTTAACATGCTCTTCATCAATCAGGGTGGCAAGCTTGGCAAGAAGGCAGTTCATCACTCCCGTCGAAACACTCACCATGGCTTGTCCAGAACTTGTAGACATACCTATGTGTAAATCTTGCTCAAAAACAGATCTGCAGAAATTTGACAAGCTCTCGACAAGGGAACACAAAGAAACAAATATGCAAGAGAAGTAGCTCATATGTATGGGTGAAAGGTCATGCTAGCGACTCTTTGGCAGCTGAGAAATGAAGTCATGAAGATGGCAGGTTGCATGTACCTAATGTAAACATCGGTGGTTAGGTGAGTACTTTGACGAAATCTTACATCAAGAAAGCTTAGTCCACGAAATAAAAAAAATACAATTGATGATACCACTGGGGTTTGAATAGAGGATGATGATAGAAAACTAAAGGAGGATCCTGAAAGATATGGACAAGTCAAAACAAACATTAGCAGAAGGAAAATATAGCCAGTATATCTGTTTACAATGCAACTAATACATAAACAAGTGACATGTCAGAAAAAAAGTTTAATAGTGCAGTAGCAAAACATCGCTGCAATTTGAACTCCGAAAAATGAATAACACAGAACAGACCACAAAGGTACCTGTGCAAAAAGAGAAAAATGGAGGCACCGTCTCTGTGTATCAAGGAGATAAGAGGATTACATCTGTTTTCCTATTTCCGTTGCAGTCGCTTTTCTTGACTTTTTCCCAATCTCATACCATTCTAGATAGCAACATGCACCAATTACCTACACTCCTCTGCTTCAAGAAAACTCAGCAGGCTCGCCAGTATTTGTAGTAGGTGTGCATTGTTGCGAACAAGATCCGAAGCACCCTGCGTATCTCCTTTCAAAGCAAGTGTTATAACTGCAGTGCAGACTGCTGCGTTGCACAGTCAATCTTGTCTCAATTCTTCAAGGGCCTTCTCCTTGTCATACTCTCAAGCAACATCTTCGATCCATAGTGGGATAACTAATCATATGACATTTTTTTTTTTTGAAACTTTCAGGACATGCTGCTGTCAAAGCTTAATTTACAGTTTCCCACCATTTAGAAAACATTTATTTAGCATTTGCCACACTGATTTAAACTCGTCTTATTCCTCCTCTTTTTTGACTTCAATTCCTTTTGAAACCAGTCCCAACTTCCTCTTGCCGTTTTGGCCTTGCGCCATGTTGTCTTTGTTCCTTTCTCCCCGCAGCCATGATGGTGGCCTCCTCCATCCATCCAGCCTCGGAGCTTCCCGCCGCGTACCGGACGACGCGCGGGCTCCTCCCCTTCCCTCGATCCTCAAGATGAGCACCCCCACCGGAAGAATGAGGGAGGAGGCGATGAAGGGCGGCATATGCCGATGCACCCATTGGCGGCGGACGGAGGCGTGGTT

Explanation	CPC Score
noncoding	-1.02272

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0065900.1	10	8942116	G	T
Osa10LNT0065900.1	10	8942127	T	C
Osa10LNT0065900.1	10	8942207	T	C
Osa10LNT0065900.1	10	8942357	T	A
Osa10LNT0065900.1	10	8942639	G	A
Osa10LNT0065900.1	10	8943948	T	C
Osa10LNT0065900.1	10	8943952	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0065900.1	osa-miR5806	Cleavage	4.0	22.955	1	21
Osa10LNT0065900.1	osa-miR169p	Cleavage	5.0	22.709	1	22
Osa10LNT0065900.1	osa-miR1857-5p	Cleavage	4.5	18.521	1	21
Osa10LNT0065900.1	osa-miR5148a	Cleavage	4.5	13.055	1	24
Osa10LNT0065900.1	osa-miR5148b	Cleavage	4.5	13.055	1	24
Osa10LNT0065900.1	osa-miR5148c	Cleavage	4.5	13.055	1	24
Osa10LNT0065900.1	osa-miR5492	Cleavage	5.0	22.451	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0065900.1	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0065900.1	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0065900.1	10	qPBN-10	Morphological trait	Panicle/flower	RM216	RM311
Osa10LNT0065900.1	10	nan	Physiological trait	Sterility	R2309	RG257
Osa10LNT0065900.1	10	nan	Physiological trait	Sterility	C701	C16

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus