>Osa10LNT0066300.1

GTCGACAGAAAATAGCATCTAGAATCTGTCAAATTTTGTCACCATACGATTTCAATCTAACAGCTCACATTTTTTTCAGCAAAAAAATATAAAAAAAGAAATGGGCTATACAAACAGCAAAATAAAGTATGGACAATTTTTCAGGGCCTATTTATCGTGGCCCAAATCCAAACCAAAGCCCAAACCGAAATGATTCTAAAGTGAAAAGCCCAATTTGGTGATTTCTTCACGTGACCCATCAGAAAACATGTTTGCCAAGAAGATGGCTGACAAAAGCACGTGATCAGATATCAATTCTGGAAACAGCAAAGTCACACAAGCAAACTCAGATCCATGTAGTAATCGTTTTCTTCTGATTTGATCTTCTGATTCTTCTTCTTCATCGTTTTCTTCTTCTGAATCTTGCAATTTAGATCCATGTAGTCACTACA

Explanation	CPC Score
noncoding	-1.31839

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0066300.1	10	10305151	T	C
Osa10LNT0066300.1	10	10305435	A	G
Osa10LNT0066300.1	10	10305447	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0066300.1	osa-miR5539a	Translation	5.0	12.054	1	22
Osa10LNT0066300.1	osa-miR6253	Cleavage	5.0	9.872	1	22
Osa10LNT0066300.1	osa-miR5539b	Translation	5.0	12.054	1	22
Osa10LNT0066300.1	osa-miR426	Translation	4.5	15.799	1	21
Osa10LNT0066300.1	osa-miR1852	Translation	4.0	7.809	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0066300.1	10	nan	Physiological trait	Sterility	R2309	RG257
Osa10LNT0066300.1	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0066300.1	10	qSPB2-1	Morphological trait	Panicle/flower	C1633	RM239
Osa10LNT0066300.1	10	qSPBp10-2	Morphological trait	Panicle/flower	C1633	RM239
Osa10LNT0066300.1	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0066300.1	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0066300.1	10	trdw10.1	Resistance or Tolerance	Drought tolerance	RG257	R1261

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus