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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0067500.1

TCTAGAGTGCAGTACGGCGCTTCAAATGCTTGAGGGCTCGAACCAATCTTCTGTGACCCATCATCAGAAGAAGCGTAGTGAGCATCCTGATGATTTTGTGTTATATAGAACCTACCATTTCCCCTGGTGAAATCTTGTGGAATGGTACTCAACAGGGAGTTGATCCTGCCGTCCTTTTCACAAACATGTTCAGTATGTTGATACCATCAACATCCCAAGAAACAGGCGTCCTCGAAGCCGGCCAGATCCTCCACCGGCAACAGAGGTAGAGGGAGAGAGCAGCAGGAGGAGGGAGGAGGAGAAAGGGGAATCGGGGAGGTAAAAGCGAAGGGAAGGAAGGAGGCGTGGGGGGTGGAGTGGAGAAGACGACGACTGCGGCTGCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.891505
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0067500.1 10 11607196 T C
Osa10LNT0067500.1 10 11607518 C T
Osa10LNT0067500.1 10 11607886 C T
Osa10LNT0067500.1 10 11607919 A C
Osa10LNT0067500.1 10 11608406 A C
Osa10LNT0067500.1 10 11608570 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0067500.1 osa-miR535-3p Cleavage 5.0 19.521 1 21
Osa10LNT0067500.1 osa-miR1425-5p Translation 4.5 18.183 1 21
Osa10LNT0067500.1 osa-miR2118c Translation 4.5 14.814 1 22
Osa10LNT0067500.1 osa-miR2118f Translation 5.0 20.658 1 22
Osa10LNT0067500.1 osa-miR2118h Translation 5.0 14.814 1 22
Osa10LNT0067500.1 osa-miR2118j Translation 5.0 20.658 1 22
Osa10LNT0067500.1 osa-miR2118k Translation 5.0 14.814 1 22
Osa10LNT0067500.1 osa-miR2118m Translation 5.0 20.658 1 22
Osa10LNT0067500.1 osa-miR2118q Translation 4.5 14.814 1 22
Osa10LNT0067500.1 osa-miR2932 Cleavage 5.0 21.34 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0067500.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0067500.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0067500.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0067500.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0067500.1 10 trdw10.1 Resistance or Tolerance Drought tolerance RG257 R1261
Osa10LNT0067500.1 10 nan Physiological trait Sterility R2309 RG257
Osa10LNT0067500.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus