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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0068800.1

CACAAAACAGTAAGCTCTTATTACTTCTGTTGTGTAATGACAAAGCATGGATACTACTGAATCCACTTGCAGATCACAACAGCCGCTGAAATACAACACAAGGCATCACAGTTCAATTCAATTCAATCGTGGACAGTCTTTGAGCCTGATGTTCTACCAGAGAATCGATTTAAATATGAACTAGGAAACAAATGCAGCCCTCTCATACACACCACAAGAACGAACGATACATTTCAGTTAGTCAACTGAGGACTAGCAGCAGCACAAGTGCCCATCACCACAACAAGTTGAGCAAGATTCCAACCCAACCCATGTTCTCCAATCTTCCTTTCAGTCTCGACGAAACTCCTGGTCTTCGCTGGCTTTTTGTCGCTGCGGGTGATTTTCCGGATGGAACAACAACAAATGAAGGTGATTGATCCTGTTATGTTGTCTGGTCATGAGGTGTAGCAGTGGAATTTGTAGGCCGCCTCCTCCTCTTGCATGGCTCTGAATCGACTTCGACATCTTCGTCAGGAAAATTCTGATCAGATACTTCTGTGCTTTTATCAGCAAGAATTCCTCCAGCACAACTCTTCGCTTCTCTTCCATGCACCCGAACCCTCTGTCGGACCATGTCAGTACCCGACTCATCGTCATCCACAGAAAACCCCACCGCATCATTCTTGCGGTTCACACCGGCATCGCGTGGTCTGAAACGCCTTATCCATGGATTCTCAGGGAAGCAGCTCATGCCTCCATCATGAGCGTGAGCATCATTCCTCTCAGACCTTAGGTTGTCGCACACACCCTCCCGGTGCACCCTGAACCCAATTGCGCCACCCGCATGACTCCTATTCCTGTCAAGCCCATGGTGGTCATGCCTATAGAGTTGTTCCATGAAGGATGCCTCCATGGAGCTTATGTACAAGCTGTGCCTCTCATTTGTCCATCCATCTGACATCAAGTCCAGGAATTGATCTCCCTTGGTCAGCGGCTCGGCGTTGATCGGCGGGTTCAACGACACATCCCCCATGACAAAATCTCCCAAGAAGCAGGACAAAACCAAACAAAAATTGAAAAAAACAATTAACCCTGGAATCCAAATCTCTCCAAATTGGACACCCCCCCGAACGAAGAAATCACAAGGCCCTGGATTACTACACAAGCAAATCAGAGGGGAACAAGTGAACAACCCACAAACAAATCAAGAAACCAGCAAATACTTTCTTCTTTTCTTTTTCAAAAAATAAATAAATAACCGCGATTCAGAGCAAGAAACCGTAAGCAGAGAAAACCCAGAAGAACAGAACGAACCCGCGACGATCTCGCCTTGCCTCCCCGGTGGAGGGAGAGATCAGAGACGACGGCGAGATATATAGTCTAGCGCGACGACGGATCGGAGAGGAGGAGGCGGAGGCGGTTCATCCGGGCGGCGGAGAGGGGAGGGGGGAGAAGTGTCCAGGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.955901
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0068800.1 10 12899710 A G
Osa10LNT0068800.1 10 12899727 A G
Osa10LNT0068800.1 10 12900344 C A
Osa10LNT0068800.1 10 12901089 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0068800.1 osa-miR5795 Cleavage 4.5 15.562 1 22
Osa10LNT0068800.1 osa-miR6246 Cleavage 5.0 16.295 1 23
Osa10LNT0068800.1 osa-miR159a.1 Cleavage 5.0 11.442 1 21
Osa10LNT0068800.1 osa-miR159b Cleavage 5.0 11.442 1 21
Osa10LNT0068800.1 osa-miR159c Cleavage 4.0 11.442 1 21
Osa10LNT0068800.1 osa-miR159d Cleavage 4.0 11.442 1 21
Osa10LNT0068800.1 osa-miR159e Cleavage 4.0 11.442 1 21
Osa10LNT0068800.1 osa-miR820a Translation 5.0 20.233 1 21
Osa10LNT0068800.1 osa-miR820b Translation 5.0 20.233 1 21
Osa10LNT0068800.1 osa-miR820c Translation 5.0 20.233 1 21
Osa10LNT0068800.1 osa-miR5486 Cleavage 5.0 17.491 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0068800.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0068800.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0068800.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0068800.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0068800.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0068800.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus