>Osa01LNT0005000.2

AACAACTGATCATATTTAAATTCATTTGTTTTTCATTCTTCAATCATACAATTAACCTACTAACTGTACTGTGCACAAGCTTGGCACCATTTCAATCAAGTGTATTTTTTTAGATAATGGAATGAAATATTCAAGCAAGTGTATACCCTGTGGTCAACAACTATTCTCTATTTACATGTACTATTCACATATATGGCTGACACTAGGGGTCTCATACTTGCCAAACCTACTGCCTGCATTGTGCTAAGTATTGCATGAGAAAGAATTGCTGGTTCCTTAGTAATATACTTTGATAAGGATTCTGTTTTTCTTTTTTAGGAAAATGATGAAGAAGAAAGCACTGACTATGGCTTCATTCAGACAAAGGGCAAAAAGAAGCGTTCTACCTGATAACTTCTCCAATCAAGACAGCCTACTTTTGCTATCTATAGTCCAAGATGGACACTTTTGTTATCCTCTCATCTACTAGCCAAATTACTTTTGGTGTATCTAGCTCTGACTAAGAACCTAGACTGATCTACTAGCCAGTTACTCTAATACAAAGTTGACATGGAGCTTTATTAAAATCTTTCATTATTTAAGCTCTAGATCAACATCTAGAGGATGATGACGATGACGATGGGTTGCTTGGTTCCGGCAAACGATTACGAGGACGTCGGCCGGGTTCTCGAGAATCCTGTCGTCGTCTCCCGTTGTTGAAGATAATATGTCAATACTCTTCAAATGTATCTGCCTTGTGATCCAACAAAATCTTCAGTGTCTTATCCTTGCCATTGTTAGCAGCATGAAAGAGTGGTGTTCCAAGGCCACAGTCTATGTCAACAGGTATCCCTTTTGAAAGCAAGAACTCTGTTACCTTACAGCATCCTGTGCCAGCAGCATGGTGGAGAACTGTGCATCCTCTAACATCTGCTTTTGTTACATCACCACCATGATCAAGAAAATACTGCACCGTAGGAACATCACCAGACTCAGCAGCGGCCATAAACGGTGTTATATCTTCTTTTCCAGCAATATTCACGTCACCCCCCAATTCCTCCACCAAGAACTTGCAAACATTCAGATGGCCCTGGCATGCCACGGCGTGCAGCATCCCAATCCCATGCTTGTTAAGAGCTAAGACTGCATACTGGGTCTTTCCTTTCTCGATCCCAAGGCTCTTTAAAATACCTTTGAGGCGTCCGAGGTTCCCGTCGAAGGCCGCCCTCAGGAGAGCGCTCTCACTGGTGCCGTCGTCGGTGGGGCGGCAGTAGACGAACGGCGCCGCCATGGCCGCGAGGAGGGAGGAAGCTTGCAGGAGGAGGAGGACGAGGAGCGG

Explanation	CPC Score
noncoding	-1.10716

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0005000.2	1	3871944	T	C
Osa01LNT0005000.2	1	3873371	T	C
Osa01LNT0005000.2	1	3873422	T	A
Osa01LNT0005000.2	1	3873977	T	C
Osa01LNT0005000.2	1	3872514	G	A
Osa01LNT0005000.2	1	3872208	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0005000.2	osa-miR2873c	Translation	3.5	6.977	1	21
Osa01LNT0005000.2	osa-miR399e	Translation	5.0	13.399	1	21
Osa01LNT0005000.2	osa-miR399f	Translation	5.0	13.399	1	21
Osa01LNT0005000.2	osa-miR399g	Translation	5.0	13.399	1	21
Osa01LNT0005000.2	osa-miR399k	Translation	4.5	13.399	1	21
Osa01LNT0005000.2	osa-miR414	Cleavage	3.5	21.363	1	21
Osa01LNT0005000.2	osa-miR1857-5p	Cleavage	4.5	11.474	1	21
Osa01LNT0005000.2	osa-miR5146	Translation	4.5	17.469	1	24
Osa01LNT0005000.2	osa-miR5513	Translation	4.0	16.652	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0005000.2	1	nan	Physiological trait	Source activity	RG532	RG472
Osa01LNT0005000.2	1	qFLL-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0005000.2	1	qFLP-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0005000.2	1	nan	Morphological trait	Root	RM7383	RM243
Osa01LNT0005000.2	1	nan	Morphological trait	Root	RM7383	RM23
Osa01LNT0005000.2	1	gp1a	Morphological trait	Panicle/flower	RM1	R753

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus