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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0068900.1

GGGATATTTCCACAGGTATTTCAAATGGTTTTCCTGCTGAGCAGGCTACAGAGACCATATTGTTTAATTTGCACATTGCAGCACTCAACTGACTTGGTGTTGGTAAGTTTATTTGGTAGGCAAAAGAATTGGACTGGGGTGCTTCAGCCTAACACAGTGCAGCCTTGAGATATTAAGACCAGCTCATAGAAAAGCATTAACCGTTGATGTGCATGGAGTATTTTTCCTTGTATTTGTTTGTCAATAAGATGCTGGCAGCTCCATTCCTGAAGATCCATGAGCTGAGCATAGTGGGTTGCCTCTCCCAATATTAACATGAGACATGAATTATCATGAAGTAAACCTATTCCTTGAAGATTGAGCGGGGATCTTGGGCCTATCAAGATTGACTTTTTCTGTTGCCTTTGCCTGGCTGTCATGGCTATCGTGTTCTGAATGGCTTAGTATTAGCCTCGCCTTGAGTTGTACTAAGCAAGCCCCTTTTAACACATCCTTATCTACCAATGATAAGTTTCTGCAATGTAAATGAAAGTTAAGCCTGCAACAAGTAAATCTTTTGATCCCAAAAGATCTTATAGTAACTATTCAAATTGTTGTCCCATTTACATTGAAGAGCTTAGTTTTTTACTGAAACTGAAAACAGGTAACAATGGAAAACTTCAGAAGAATTCATTGCCCTCTGAAGCACTGTTAAAAAGATAGGAAAAATTTGTATTAAATACAGCAGAATCAGCAAGAAGCAATTCACATCACCCTGGCTTAGTTATCCAACAATCAAAGAAATGAATAGTCTTTACCTAAAAGCCAGATATAATGGGAGGAGCCATGTAAGCGACGCAAAAGGTCCAGCAAGCAAACTGCTTCATGACCATGTAAATGGAACCAGTGGGAACAAAAATAGAAGGAACTCTTTAGAGATGATTCAACATAATATAGTTATCATTTAGAACATTATTCTTTTATTTAGAGGTAACAACAAAAATTCTTTTGAAATATATTTTTGAATTCTGTCACACATCTTAGCAAACTCCTCGGGCCATATTAAACATCTAGGACACTCATCTAGCCAATACAACAAGATAGTACAATTTGCCAAAAGCTATTTCACTAAGGGAACAAAAGCTATCACTGCTACAACAAGATAGCTGTTTCACTAAGGGAACAAATGCTATCACTGCTGTTGAACAACCAAGAAGATGCAGTGTAAAAAGGAAATATAACCTCCAGCTGTTGAATATCAACTAATTAGGCTCAATTCATAGGACAACAACCCAAAAGGTAATAAATGCAACCAGAGCAGTGACGGGTCTGGGGAAGAACCACCACCACCTCATCCTGCCAGTCTATCTTCTGCATGTGCTAGCTACAGACAATATGATAGTAGTATGTTGGGCTGTACAGGAGAGGCAACAGAGAGGACAGCTTCTTCTCGTCCTAATCCTCCTCTATGCCATTGGCCTACCCAGTAGACAGTAGAAACTCGAAATCCACATTTAAATCAATGTAATCGCTCGAATCACACGCCCATTGATGAAAGGGGAAAACACAGGGAGCTGCTAATCACGCACCTAACCGCCGGCGGCGACAGGGACCCGTCGAACTCGATGCGTCGTCACCACGTCGAAGACCTCCAAAAAACTGTTGGGGGAGCCGCAGCGACCTCAAATCGCTGGGACCTCCAGCAGCAGCCGCCGCTGCCAAACCCCTGTGCTAGAGGCTCCGACGCCGCCGCCAGGTCCCCGACCTCAAGGCTATGTTGAAACCGCCGTTGAGCCCCTCCATCGAGCGCAGCCACCACCGTACACTTTAGGGAAGCACTGTTGGAGGACGGGTAAAACGACGGCGCTGGAAAGGCCATGGAAGAGGAGGAGGAGGCGGCGCCGCGGCGGAGGAGCATCGGCGCCGCCGGTCAAAGAAGCGAGAAGCGAGAAGGGAGATGGGGATTGGGATGCGACGTGGAGAGACGAGAGATCGT

Coding Potentia
Explanation CPC Score
noncoding -1.18874
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0068900.1 10 13037144 A G
Osa10LNT0068900.1 10 13038821 A T
Osa10LNT0068900.1 10 13038837 T G
Osa10LNT0068900.1 10 13038935 C T
Osa10LNT0068900.1 10 13040005 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0068900.1 osa-miR5530 Cleavage 4.0 22.66 1 21
Osa10LNT0068900.1 osa-miR5542 Translation 5.0 17.221 1 21
Osa10LNT0068900.1 osa-miR7693-5p Translation 5.0 14.543 1 24
Osa10LNT0068900.1 osa-miR168b Cleavage 5.0 19.34 1 21
Osa10LNT0068900.1 osa-miR528-3p Translation 4.0 14.291 1 21
Osa10LNT0068900.1 osa-miR2092-3p Translation 4.5 14.765 1 22
Osa10LNT0068900.1 osa-miR2907a Translation 5.0 14.962 1 22
Osa10LNT0068900.1 osa-miR2907b Translation 5.0 14.962 1 22
Osa10LNT0068900.1 osa-miR2907c Translation 5.0 14.962 1 22
Osa10LNT0068900.1 osa-miR2907d Translation 5.0 14.962 1 22
Osa10LNT0068900.1 osa-miR5510 Translation 4.5 17.349 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0068900.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0068900.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0068900.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0068900.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0068900.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0068900.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus