>Osa10LNT0068900.2

GGGATATTTCCACAGGTATTTCAAATGGTTTTCCTGCTGAGCAGGCTACAGAGACCATATTGTTTAATTTGCACATTGCAGCACTCAACTGACTTGGTGTTGGTAAGTTTATTTGGTAGGCAAAAGAATTGGACTGGGGTGCTTCAGCCTAACACAGTGCAGCCTTGAGATATTAAGACCAGCTCATAGAAAAGCATTAACCGTTGATGTGCATGGAGTATTTTTCCTTGTATTTGTTTGTCAATAAGATGCTGGCAGCTCCATTCCTGAAGATCCATGAGCTGAGCATAGTGGGTTGCCTCTCCCAATATTAACATGAGACATGAATTATCATGAAGTAAACCTATTCCTTGAAGATTGAGCGGGGATCTTGGGCCTATCAAGATTGACTAAGGCGACATCAAGCACACATCATAAGCATCTCAGTTGAAAGAACTTTTTTTTGGTAAACTTCTCTTAAGGGAAAACTAAATATTTACCATTTAAACTTAAAAAGCTACTTGCACAGAGGCTGTAAAACTACAATTCTCTTTTATTGTACCATATATGTTATTCATGTGTATGAAGAGAACACGGGGAGACTATAGTAGCAGTTCGTAATGGTGTCGCATATATAAACTCATGTATAATCAGATAAATTTAATATATATCAAATTATAGATAATATCACAGAATATACACATCTAGAAATCCTCATGATTTTGTATTGACAAAACCGAACCAAACTAACATGTTGTACCCATCCAAGAATACCTCTTGTAGGTAAATTGGGAGTGTTAGGATTAATTTTGTAGATCGACTATCCAACAAACCATAGGACAATACATCAATAAAGATTAAAGCATCTCCTGGTTCCCCAAAGAAACTTCAATGCAAGCATATGTAGTTCCTTTTTCTGTTGCCTTTGCCTGGCTGTCATGGCTATCGTGTTCTGAATGGCTTAGTATTAGCCTCGCCTTGAGTTGTACTAAGCAAGCCCCTTTTAACACATCCTTATCTACCAATGATAAGTTTCTGCAATGTAAATGAAAGTTAAGCCTGCAACAAGTAAATCTTTTGATCCCAAAAGATCTTATAGTAACTATTCAAATTGTTGTCCCATTTACATTGAAGAGCTTAGTTTTTTACTGAAACTGAAAACAGGTAACAATGGAAAACTTCAGAAGAATTCATTGCCCTCTGAAGCACTGTTAAAAAGATAGGAAAAATTTGTATTAAATACAGCAGAATCAGCAAGAAGCAATTCACATCACCCTGGCTTAGTTATCCAACAATCAAAGAAATGAATAGTCTTTACCTAAAAGCCAGATATAATGGGAGGAGCCATGTAAGCGACGCAAAAGGTCCAGCAAGCAAACTGCTTCATGACCATGTAAATGGAACCAGTGGGAACAAAAATAGAAGGAACTCTTTAGAGATGATTCAACATAATATAGTTATCATTTAGAACATTATTCTTTTATTTAGAGGTAACAACAAAAATTCTTTTGAAATATATTTTTGAATTCTGTCACACATCTTAGCAAACTCCTCGGGCCATATTAAACATCTAGGACACTCATCTAGCCAATACAACAAGATAGTACAATTTGCCAAAAGCTATTTCACTAAGGGAACAAAAGCTATCACTGCTACAACAAGATAGCTGTTTCACTAAGGGAACAAATGCTATCACTGCTGTTGAACAACCAAGAAGATGCAGTGTAAAAAGGAAATATAACCTCCAGCTGTTGAATATCAACTAATTAGGCTCAATTCATAGGACAACAACCCAAAAGGTAATAAATGCAACCAGAGCAGTGACGGGTCTGGGGAAGAACCACCACCACCTCATCCTGCCAGTCTATCTTCTGCATGTGCTAGCTACAGACAATATGATAGTAGTATGTTGGGCTGTACAGGAGAGGCAACAGAGAGGACAGCTTCTTCTCGTCCTAATCCTCCTCTATGCCATTGGCCTAACCGCCGGCGGCGACAGGGACCCGTCGAACTCGATGCGTCGTCACCACGTCGAAGACCTCCAAAAAACTGTTGGGGGAGCCGCAGCGACCTCAAATCGCTGGGACCTCCAGCAGCAGCCGCCGCTGCCAAACCCCTGTGCTAGAGGCTCCGACGCCGCCGCCAGGTCCCCGACCTCAAGGCTATGTTGAAACCGCCGTTGAGCCCCTCCATCGAGCGCAGCCACCACCGTACACTTTAGGGAAGCACTGTTGGAGGACGGGTAAAACGACGGCGCTGGAAAGGCCATGGAAGAGGAGGAGGAGGCGGCGCCGCGGCGGAGGAGCATCGGCGCCGCCGGTCAAAGAAGCGAGAAGC

Explanation	CPC Score
noncoding	-1.20178

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0068900.2	10	13037144	A	G
Osa10LNT0068900.2	10	13038821	A	T
Osa10LNT0068900.2	10	13038837	T	G
Osa10LNT0068900.2	10	13038935	C	T
Osa10LNT0068900.2	10	13040005	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0068900.2	osa-miR5530	Cleavage	4.0	22.747	1	21
Osa10LNT0068900.2	osa-miR5542	Translation	5.0	17.221	1	21
Osa10LNT0068900.2	osa-miR5835	Translation	4.0	11.248	1	24
Osa10LNT0068900.2	osa-miR168b	Cleavage	5.0	18.893	1	21
Osa10LNT0068900.2	osa-miR1862e	Translation	4.0	11.14	1	24
Osa10LNT0068900.2	osa-miR2092-3p	Translation	4.5	14.765	1	22
Osa10LNT0068900.2	osa-miR2907a	Translation	5.0	15.624	1	22
Osa10LNT0068900.2	osa-miR2907b	Translation	5.0	15.624	1	22
Osa10LNT0068900.2	osa-miR2907c	Translation	5.0	15.624	1	22
Osa10LNT0068900.2	osa-miR2907d	Translation	5.0	15.624	1	22
Osa10LNT0068900.2	osa-miR5510	Translation	4.5	17.349	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0068900.2	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583
Osa10LNT0068900.2	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0068900.2	10	qSPB2-1	Morphological trait	Panicle/flower	C1633	RM239
Osa10LNT0068900.2	10	qSPBp10-2	Morphological trait	Panicle/flower	C1633	RM239
Osa10LNT0068900.2	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0068900.2	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus