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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0068900.3

GGGATATTTCCACAGGTATTTCAAATGGTTTTCCTGCTGAGCAGGCTACAGAGACCATATTGTTTAATTTGCACATTGCAGCACTCAACTGACTTGGTGTTGGTAAGTTTATTTGGTAGGCAAAAGAATTGGACTGGGGTGCTTCAGCCTAACACAGTGCAGCCTTGAGATATTAAGACCAGCTCATAGAAAAGCATTAACCGTTGATGTGCATGGAGTATTTTTCCTTGTATTTGTTTGTCAATAAGATGCTGGCAGCTCCATTCCTGAAGATCCATGAGCTGAGCATAGTGGGTTGCCTCTCCCAATATTAACATGAGACATGAATTATCATGAAGTAAACCTATTCCTTGAAGATTGAGCGGGGATCTTGGGCCTTTTTCTGTTGCCTTTGCCTGGCTGTCATGGCTATCGTGTTCTGAATGGCTTAGTATTAGCCTCGCCTTGAGTTGTACTAAGCAAGCCCCTTTTAACACATCCTTATCTACCAATGATAAGTTTCTGCAATGTAAATGAAAGTTAAGCCTGCAACAAGTAAATCTTTTGATCCCAAAAGATCTTATAGTAACTATTCAAATTGTTGTCCCATTTACATTGAAGAGCTTAGTTTTTTACTGAAACTGAAAACAGGTAACAATGGAAAACTTCAGAAGAATTCATTGCCCTCTGAAGCACTGTTAAAAAGATAGGAAAAATTTGTATTAAATACAGCAGAATCAGCAAGAAGCAATTCACATCACCCTGGCTTAGTTATCCAACAATCAAAGAAATGAATAGTCTTTACCTAAAAGCCAGATATAATGGGAGGAGCCATGTAAGCGACGCAAAAGGTCCAGCAAGCAAACTGCTTCATGACCATGTAAATGGAACCAGTGGGAACAAAAATAGAAGGAACTCTTTAGAGATGATTCAACATAATATAGTTATCATTTAGAACATTATTCTTTTATTTAGAGGTAACAACAAAAATTCTTTTGAAATATATTTTTGAATTCTGTCACACATCTTAGCAAACTCCTCGGGCCATATTAAACATCTAGGACACTCATCTAGCCAATACAACAAGATAGTACAATTTGCCAAAAGCTATTTCACTAAGGGAACAAAAGCTATCACTGCTACAACAAGATAGCTGTTTCACTAAGGGAACAAATGCTATCACTGCTGTTGAACAACCAAGAAGATGCAGTGTAAAAAGGAAATATAACCTCCAGCTGTTGAATATCAACTAATTAGGCTCAATTCATAGGACAACAACCCAAAAGGTAATAAATGCAACCAGAGCAGTGACGGGTCTGGGGAAGAACCACCACCACCTCATCCTGCCAGTCTATCTTCTGCATGTGCTAGCTACAGACAATATGATAGTAGTATGTTGGGCTGTACAGGAGAGGCAACAGAGAGGACAGCTTCTTCTCGTCCTAATCCTCCTCTATGCCATTGGCCTAACCGCCGGCGGCGACAGGGACCCGTCGAACTCGATGCGTCGTCACCACGTCGAAGACCTCCAAAAAACTGTTGGGGGAGCCGCAGCGACCTCAAATCGCTGGGACCTCCAGCAGCAGCCGCCGCTGCCAAACCCCTGTGCTAGAGGCTCCGACGCCGCCGCCAGGTCCCCGACCTCAAGGCTATGTTGAAACCGCCGTTGAGCCCCTCCATCGAGCGCAGCCACCACCGTACACTTTAGGGAAGCACTGTTGGAGGACGGGTAAAACGACGGCGCTGGAAAGGCCATGGAAGAGGAGGAGGAGGCGGCGCCGCGGCGGAGGAGCATCGGCGCCGCCGGTCAAAGAAGCGAGAAGC

Coding Potentia
Explanation CPC Score
noncoding -1.18041
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0068900.3 10 13037144 A G
Osa10LNT0068900.3 10 13038821 A T
Osa10LNT0068900.3 10 13038837 T G
Osa10LNT0068900.3 10 13038935 C T
Osa10LNT0068900.3 10 13040005 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0068900.3 osa-miR5530 Cleavage 4.0 22.747 1 21
Osa10LNT0068900.3 osa-miR5542 Translation 5.0 17.221 1 21
Osa10LNT0068900.3 osa-miR168b Cleavage 5.0 19.234 1 21
Osa10LNT0068900.3 osa-miR2907a Translation 5.0 16.246 1 22
Osa10LNT0068900.3 osa-miR2907b Translation 5.0 16.246 1 22
Osa10LNT0068900.3 osa-miR2907c Translation 5.0 16.246 1 22
Osa10LNT0068900.3 osa-miR2907d Translation 5.0 16.246 1 22
Osa10LNT0068900.3 osa-miR5510 Translation 4.5 17.349 1 21
Osa10LNT0068900.3 osa-miR2092-3p Translation 4.5 14.765 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0068900.3 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0068900.3 10 nan Physiological trait Sterility C701 C16
Osa10LNT0068900.3 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0068900.3 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0068900.3 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0068900.3 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus