>Osa10LNT0069900.1

CCTTCACCCGTTGCAACGCACGGGCATTTTTTCTAGTCACAACCAATATTTAAAAGTTAGGCACATGAATTTGGAAAGGAAAAAGTACGAATTACCCCCTGAACTATCGCGGTCGATCGAATTACACCCATGAACCACAAAACCAGACATTTTTCACTCTTGACTATTGAGACCGGAAAGATTACCCCCCCGATCAATCCGCGGTGGTTTTAGTTCTATATGGCAGCCTAGTCAGCATTTTTGAAAAAAAAAATCGGAGACCCCACCTATAAATTTCTAACCCTCTCTACTTCTCTCTGTTCTCTCTCTTTCCCCAATCCCCTCTATCTCTCTCTTTTCCCTGCCTCACCTCCCTCACAGCGGCGCAGGTGGCGAGCACGCAGCCCACCACCGTTGTGCGCTGCCACACCACCTACGCGCAGCCCAGCTTGGCCTACCTCCGCCGGCGGCCGCCATAGCTTGCTCCGCGTCCACCTCCACCGCCGCCCACCTGAGCTCGCTTCGCCTCTGTTCGCCTCTGCCGCCGGCCGCCCCCGCTGCATGAGCACCGTCGAGGGCGAGGCAACAGAGGAGTAAATCGACAACCAGGGACGCTGCCCGCCAGTGTCCTTTTCTTCCACTTTCTTCCCCTTCTCTCTCTTCTTTCTCTTTTTTTTTCTTCAGATCTGTACATCGTCCCGGTGAAGAAAGCGGCACGTGTGGTGGGTGAGCCAGGGGAGCATAAGAGTGGGAGTAGCAAGGTCCTCCTAGGTCGTCGTTACCATGACCACCGCCCCCATGACAGAGACAGGGACGGATGGGGGAGGACGACATAGCCGTCGTCGAGGAGGAGGCGGTGGCGTCCGGGGTGTGTGTGCAGGCCGCCGCGCCGAAGGTGGAATACGATGAAGGCCACTGCTAGCGTCGGCCTGGCACGGAGGTGGAAGACAATGACGGCCACCGTGGTGATGACCTAGGAGCGACGTGGCCTACTAGATCGATGACGCCAAGCACTGCCCGCCGCCCACCGGTGTCCCTTCCTCTCTTTTCTTCTACTTCCTCTCCCTTCTCTCTCTGGGACGGAGCAGGGAATACTTCCTCTCCCTTCTTTCTCTCTGGGAACAGAGTAGGGAAAGGCGTCGGCGGTGCCGTCCGAGGTGTGTGTGCAGGCGGTGACACTACTCTGCCATGGCACGAGGTGGAGGCTGCAGTGCATTCGCGCCGCCTAGCGCCCATCGTTGCCTTGTTCGCGAAAAAAGAAAGACAGAAGGGGGGAGATGCTGACATGTGGAGCCCATGGACTTTTTTAATAAAAAATGGTTGACTGGACTGCCACGCTTAAGCCACATAGGACAAAACTGCTCCGGATTGAGTTAGGGGGGGGTAATATGTCTGGTTTACATAGTTTAGGGTGTAAAATACCTAGTTTTCAAGTTTGGTGGGGGGTATATACCGGGCTAACACAATAGTTCAGGGGGTATTTCATACTTTTTCCATATGGAAATTCAAGACCACTCACTGCCGCTGTCCGACCACGCGCCGCCATGCCTTGGAGCCGTCTCGCCCGGCCGTCGCCTCACGCGCCACTCCTTTGCCGAGCCACGCGGTGCCACGACCGCCGTGCCGTCCGCCGCCCATCCTGTGCCCGTCACTCCTTCGCCGAGCCGCGTGGTGCCACGCCTGCCGCACCGTCCCCCGCCCGTCCCACGCCCGTCGCCCACCTGTCCCGCGCCTGCCGCGGCCGCCGCTCCTCCGTTCGCCGAGCCGCTGCGTCGCCTCCTCCAGCAGCCACCGCGCCCCGCTGACGTAGCCGCCGCCACCTTCTCCTCCTCCTGGTTGCTCCCGCCCCGCTGCTCCCTCATGGGGAGGAGGGGAGGGGGAGGGGCCACCGCCCGCTGTTGATGGAGGAGGGGAGGGGAAGGTGGGGAGGAGTGGCTGAGAA

Explanation	CPC Score
noncoding (weak)	-0.992091

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0069900.1	10	13691688	G	A
Osa10LNT0069900.1	10	13690580	T	C
Osa10LNT0069900.1	10	13690603	T	C
Osa10LNT0069900.1	10	13691017	C	T
Osa10LNT0069900.1	10	13691257	T	C
Osa10LNT0069900.1	10	13691326	C	T
Osa10LNT0069900.1	10	13690623	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa10LNT0069900.1	DTM_#DNAt_MULE_japo_Os0166	Chr10	-	13690240	13691636	1396

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0069900.1	osa-miR5821	Cleavage	4.5	23.529	1	21
Osa10LNT0069900.1	osa-miR156k	Cleavage	5.0	13.15	1	21
Osa10LNT0069900.1	osa-miR815a	Translation	4.5	2.504	1	21
Osa10LNT0069900.1	osa-miR815b	Translation	4.5	2.504	1	21
Osa10LNT0069900.1	osa-miR815c	Translation	4.5	2.504	1	21
Osa10LNT0069900.1	osa-miR529b	Cleavage	4.5	2.05	1	21
Osa10LNT0069900.1	osa-miR529b	Cleavage	4.5	18.58	1	21
Osa10LNT0069900.1	osa-miR529b	Cleavage	4.5	1.343	1	21
Osa10LNT0069900.1	osa-miR2919	Cleavage	3.5	14.48	1	19
Osa10LNT0069900.1	osa-miR2919	Cleavage	5.0	10.515	1	19
Osa10LNT0069900.1	osa-miR2919	Translation	4.5	1.386	1	19
Osa10LNT0069900.1	osa-miR2275c	Cleavage	4.0	12.025	1	23

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0069900.1	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0069900.1	10	nan	Resistance or Tolerance	Other soil stress tolerance	R1629	R2447
Osa10LNT0069900.1	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386
Osa10LNT0069900.1	10	qSPB2-1	Morphological trait	Panicle/flower	C1633	RM239
Osa10LNT0069900.1	10	qSPBp10-2	Morphological trait	Panicle/flower	C1633	RM239
Osa10LNT0069900.1	10	Phyllochron	Morphological trait	Culm/leaf	R1629	R2447
Osa10LNT0069900.1	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus