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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0070300.1

GGAAAACAACAAATATCTCTCCTCAATACAATTGCGTGGGCACAAGTTGACCAAATGTTACACTTATAATACACCCTCCAAAATTATTTATAAGATAGACTAGGGAGGAGGGATGAACTACAATCCTGGGATTAGACTATGCTGAGACTGGTACTTTTATTGCCATCATCTGGATGAGCCAAGGCCTATCAAGGTCTGGATCAATGAAAGAGTGAGAAAGGAAATTCTCCACTTCAACATCAAGCAATTGTCTACACCAAGCCACTCGGTTTGATGGGCGGAAACCTGGCCCTGAGCACCTGTACTCAAAGAAGCAAGCAGTTCGTTCATTCTCAGATCTGTCCCAATTATGCCACCCAGCAGGCTTAATACAACGATCCATAAAAGTGTGCGCAAAGACAACCCTTCCAAACGGTCCCCAAGGCCGACCCAGGAACATATATCCAGCTTCTCCATTTCCAGTAATAATACACCTCAAGAACACATAACCAGTAGTTTCTGATGAGGATTTCCGGCTGTGAGCAGTAATGTAACCCGCTGATTTGCAATGAATATGGCAATGTTCCAACAGGGCAATAGAGTTGCCGAAGATGAAGTCACAGTTACCTTCGATGTAACAGTCCCTTAAGTATTGTTTTCCATAATGTAAATATAATGTGTCCTGAATGTTTTATTCGACAACCTCATAAATTAACAAAAGCTTCGCTGAATGAAACGATTTAATGAAGAGGTGAATAAATGAGCGTACTTGCCAACCAAGGAACCTGCAATTGTAGAAGGCACACCTATCTGCTGTTACTCGGAGAGCAACTGCCTGCCCAGACCCCTGAGGAGCTGAGTTCTCAAATGTGATATTCTCTGCGATGAAATCCTCCCCCTCCACAATAATTGTTCCGCATCCAAACGTTCCTGTCCCAATAACCCTGGACGACTGGGAGTGCTTGATGCGGGTGGCGGTGTTGTCCCAGGTGATGACGGTGGCCTCGGGCGAGCCGGCCTCGCCGGAGAGGGTGACGAGGTTCTTGGCCTTGGCGACGTAGACGGGCTCCCTGTACGTCCCCGGCGCGAGGCGGATCACCGTCCGCACCCTGTTCCCCACCGGCACCGCGTCCACCGCCGCCTGCACCGTCGCGAACACCGCCTCCCCCTCCTCCCCCCGCTCCGCCTCCGCGCGCGCCCCTCCTCGCCCCGGCGGCGCCACGCGGAGAACTCGCCGCGGCTGCTGCTGCGCCATGGCGAGATCGGCGGCGCGGCTTTGTTTGGTTTGGGTTGGCGGTGGCGGTTTCAC

Coding Potentia
Explanation CPC Score
noncoding -1.21053
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0070300.1 10 13934118 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0070300.1 osa-miR5537 Cleavage 3.5 10.53 1 22
Osa10LNT0070300.1 osa-miR398b Translation 5.0 12.826 1 21
Osa10LNT0070300.1 osa-miR164c Translation 3.0 12.022 1 21
Osa10LNT0070300.1 osa-miR444b.1 Translation 3.5 12.442 1 21
Osa10LNT0070300.1 osa-miR444c.1 Translation 3.5 12.442 1 21
Osa10LNT0070300.1 osa-miR5147 Cleavage 5.0 12.428 1 21
Osa10LNT0070300.1 osa-miR5488 Cleavage 5.0 14.178 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0070300.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0070300.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0070300.1 10 Phyllochron Morphological trait Culm/leaf R1629 R2447
Osa10LNT0070300.1 10 nan Resistance or Tolerance Other soil stress tolerance R1629 R2447
Osa10LNT0070300.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0070300.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0070300.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus