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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0070800.1

CAAACTTTCAATCATTTTGTTGTACTGAACAGCATAACATCTGCTTATTACAGTGAATGAATTTATAAATCTCACTAGCAGAAAACAACAATAATGGTGTAATACCAAAAGGTACCTCTTCTATCTCTCGATTTAACAAGGTATGATTCATATGCAGCAAATAGTGCATATGGTATTGAACTATTGACATTTGGAATGACAAAATACCAAATGTCCTCAAAATTTGTCTCCTAAAATACAAGGAGCTCTCCTGGATCCCAATTCCATTCTAACAACTTATTATTGCCTGATGATAAATTACAAATGGAGATCACATACACCTCCAAGAACACAACAAAAAATTTGCATGCGCAGCTAAGTTCTCATGATCAAACTCTCCTCGTAACCAAAGCACAAGGCACACTTTGTCGAATTATACCGTGATCCGTGACCAAAACTACAACACGGATCATATGCATCGCTGAGTTTGGAAGGGAAATTTGTATCACCTTTTTATACCGGATTCAGTCAAGAAATCCGGTTTGCCGGAGAACGGCGTCGCGCACGCGGCGGAGGTCGCGCCCCTTGAGCGTCCGGCCGACGCCCTCGAGCATCGAGGACGGCTTCACCGGCCCGCCGAAGCCGCCGCCGGCGGACGCGCGCGCCACCATCTCGTGCGGGGGCAGCATAGCGGCGTCCCCACGGAGGAGCTCCTCGTCGTCGTCGTCGTCGTATCCGTCGCCTGGCACGCCGGCCAGATGGTCCCACCCGCTCCTCCGCGGCGGCGGCGGCCGGACGGGCACCTTCACGGGAGCCGACTGGTGGTACGGCACCGCGGGGGGCTGCTCCGGGAGGTGGAACCTCACCCTGGGGGCC

Coding Potentia
Explanation CPC Score
noncoding -1.23703
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0070800.1 osa-miR5802 Cleavage 4.5 14.463 1 24
Osa10LNT0070800.1 osa-miR1854-5p Cleavage 4.0 10.774 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0070800.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0070800.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0070800.1 10 Phyllochron Morphological trait Culm/leaf R1629 R2447
Osa10LNT0070800.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0070800.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0070800.1 10 nan Resistance or Tolerance Other soil stress tolerance R1629 R2447
Osa10LNT0070800.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus