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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0071500.1

TTTTGTCAAAATTCTGTACGATCCCAACAGCATAATATAGGATGAGCAGTTAAAACTGAAAGTGTGGGCTCCTTCCGAATATAGGATGAGCAGTTAAAACTGAAAAAACACAATAGTACAATGCCATATGCCATTGAATTCCTACGGGCATTAAAAGCACAGTAATGTCTCAAAACTAAACACTATTGAGGAGTCAGGGCCCTCTTCCATGCAGCAGCATATTGCCCATTAGTCCAAACAACTACAGTTTTTTCTTTCTTTCAGAATTTAGACAAATCATGCTGTTCCAGCTTGCAGATCAAGGCCTTGTACACCAGTCAGTAGTCTTCGGTACCAGCATAATGTCACAGGTTACTCTTAGAATATACTCTACACTGTTTCTTGTTAACCCAACCAACAGGAATAGACTACATTTTGAACAGCTTCTTGTGAACTTTCAACACCAGCCGACACGTTAGCGAGACTCTCCTCGCAGTCCTACGGTAGACGCCACTTTGCTCAAGGCTGCAAGACTCATCTGTGTTCCCCTGCCCATCACCAGAATTTAGATGCTTGAATTCTGGGCACTGTAACATATTGGCGACCTTGTCTAGGTTTTGTAGCTCATTATCTTGTATTCCATGCAGGTAGTCTGTATAAGCCTGATCTTTGAATATCAGCAGGCTGCACGGCATCAGAAGAAGTGATGAAGAAGCAGGGTCAGTTTCATTTGCACCTTCAAGATTATGGGAACCATTGCTCTCTGTTGTAGTTGCCTGCGACTCTCCAGAGTGTGCATTTTGGGGATCTGTAAAGTCCTCCCCTTTAAGCCTTTGATGAGGGGTAAAGTCAATCACAACCGGTGAAGCAAGAGAAATTATAGCAACAACAGGGAAGTAGGCAGGACCATCTTGGTGTGGCATGATCCCTTGATTTGGATGATACTCATTAATTAAAACATGATTGATTGCTGAAGGAAATAAACCAGTCCATTGGCAGATTCGGTCGGTTATCTTTGTTAGCCATGAAGGTAATGCCTGCGGCAGGAGCCCCTTCTCATGCACCACTCCTCCCCAGTTCTGCAGCCTCCGGTTCTTGAGTGACTTCCACTTGGGCGCTGGCGCCTGGTAAATATGGTGGAGAAGCTGGGACTGCTCGGCGTCGGAGATGAAGCCGGGGACGTAGAGGAGGGTCGGGATGGGGCCGACGGCGTAGTCCGCGAGGCTCCTCAGCGGCGGCGCCGCCGCCGCCGATGATTCTTGGGTCGTCTTGTCGTCCTCCATTGCTGCTGCTGCTGCTTGGAGAGTTTGGACTTT

Coding Potentia
Explanation CPC Score
noncoding -1.22583
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0071500.1 10 14776840 G C
Osa10LNT0071500.1 10 14777004 G A
Osa10LNT0071500.1 10 14778484 C A
Osa10LNT0071500.1 10 14778620 T C
Osa10LNT0071500.1 10 14778854 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0071500.1 osa-miR2873c Cleavage 4.0 15.737 1 21
Osa10LNT0071500.1 osa-miR171i-3p Cleavage 5.0 18.273 1 21
Osa10LNT0071500.1 osa-miR535-5p Translation 5.0 22.786 1 21
Osa10LNT0071500.1 osa-miR1428a-5p Translation 4.5 24.49 1 21
Osa10LNT0071500.1 osa-miR5513 Translation 4.5 19.443 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0071500.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0071500.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0071500.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0071500.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0071500.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus