\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0071800.1

CTCAGACGAACTACCTGTTTTTGTAGCCTGAGACCTTGATGGAAAAAAATGAATTGCAGAAGCCACCCAAATGCAGCATAGTTTGAAATAAAATGCCTTGCTATATTATACCTATATCATATTTGCTATGGAAAGAAAACTATAACATATTGAACTAAGCTTAGATGGCCTCATTTAGACAGGAAAGCCAAAATTTTAGATACATATGCTTTGTTTTGAGCACTAAAATACTAACTCAATTACAATGGGGATGAACCCAAGAACATGGCCTGCTCAAAGCAGTGCTACAGCCTCTTGGAGCTGACATCTCTCATCTTCCCTTTTCATTTTATAGCTAGTTTCCCGCCAGAACAAAATGGTTCAAGTCTCAGTTCTTGATTGCACACAGCCACAGAAAGGTGCCCTCTTCTTTTTCTTCTGCGCACCGCCGCGCTTCTCCTTCCTTCCATACAGATAATCCCTCAGAAGAACCCGAGTGCGCTTATCGGAGACCTTGAGCCTCCTGTACTCATGCTCCTCTTCAAGCTTTAGCAGGACATACTGTATCTTCTGAAGTTCCAGTTCCAATCTCCCCACGTTTTCCGATCCTTTCTGGACCTGTCCGGATATTTTCCTCCTACTGGGGTACCCTTCTTGCTCCGCGTTCATGCTATCTGATAGCGCAGGATAGTTCTCAACCCGCTTTGTCAATTTGTTGTTGTAATTGATCTGTTCCAAGACACATCCCTCGGTATCGAGTAGCTGAGTGCTGACGGTGTTGTATTCGGAGTTCATGGGCGATTTCCCGTTTGATGGGCTCCCCATTTTCCGCTTCAGCTCCTTGATGCTCACTTGGATGCTCTGCAACCTCTGAGCATCAGAAGAGAGCTTCTCCAGTACATTGTTGCTCCATTGCTCATGAGGCTCTACAGATGATGTCGACACCTCAAGCTTATTGATTCCAAGGTCTCTTCCCCTTGCTAGCTCAGAGGAAGGGTACTCACTCTTCACCTCCTCAACCGCTTCTATGTCGTGCTCAGCTGATGATGATTTGGATGTTTGGTTTTTGCAGCTCCTCTCGGCAGCTTCCCACAGCTGCAGCATCTCGTCATCCATCCCAGCATTCGCGCCATTCTTAAGTGGGTAGAGCGCAGCTCCAGTGCCATATGGTGGACATGTGGATATTTGATCAAGTTCGATATCCTTCATCATCTGTACCTGCTTCCCTTTGGAGCCCTCGACGTTGTTCAGCTTCTCATTGTCGGAGTATATTTCCCTTGCCTCCATCTGCGACCCGCCTCTTGCTTTAAGCTCTTGAATATCTCTGTGTGCTGCTGCCAACGTAGCAGCAGACTTGGTTGACTCCTGATCATGAAGATCTTTGGCATTTCGAATAGCAACTTGAAGTGCTCCCATTCTTGCAATTAACCGCTGTAGCTCTGGAGTTCCTTCCGGCAAGGGGTGAGATTCTGGCCCATGGTTGCGCTCTTGCATAAAAGGTACCTCTGCATCTTCCTTTTTGCTTTCTGTGCTATAGGGCTTTGACAGAGAAAGAGTGTTTTCTTCCAGCTCATTGACATGATCAGACAAAGATGCTATCAGAGCTACATGTGTGCTCAAGTTGGCCTTTAGTTCTGTATTTTCCGTCATAAGTTCAAGTGCCTTCTCTTCATAGACTGCCGCATTCACTGAAGAGGATATCGCATCATCCATCAACACAACAAATTCCCCTTCATGTTGTTCAACCTCTTTCGACAGTAATTCATGTGAGGAAGTCAAACTGTCTTCCTTGTCTTTTAGGATGTCAGCTTCCACCTGCAGTCTCTCGTTTGCTTGGCGAAGAAGCGAAATTTCACCATCTTTGGTGTTTCCCTCTTCAGTCAACGTTGTGATTTTCTTCTCGAGTTCCTCTTTCACAATTTTAGCCCCTTCAATGGCAACCTGAAGCGAGCCAACAACTCCACATAATTCTCGGTTCTTTCCTTGCAACAAATGAACCTTATCTTCTGCTTCAAGTAGCTCATCATCCTTCTGCGACAGCTGTGCCATGCAGCTCTCAAGTTCACTGGCCAACTCCTGGCAAATGCTTTTGTTGATATTCAAATCAAACTCTGAGAGGGCTAACTGAGCGCTGAGAATCTCTATCAGGTAGATAAAATACTCCTTTAGGTTATTGTTTTCCGATTCAAGCATCATACCTCTTCTGCTAAGCTCTTGGACTTCGCAATCAAGTTCATCCTTACCTACACTCAACAAAGCCATCTCATCAGTAAGAGATCCCAATGCAGTTGCTACCTCATTGTTATGGCCCCTAAGGAACAAAGACAAGTGCTCGAGCCTCATGCATTCTGAAAGAAGGGTTCCATTCTCATCCTCCAAAGCATTGTAGTTCTCAATCAAAGACTGGTATTCTTTACACAAGGTCTCATTTTTCTCAGTCAAGCTCACAATTTCATTTTGTGAAGTCTGGTAGGACTCTCTTGAGCAAGATAGCTTCTCTTGTAAAACAAGTATTTCAGCTTTCAGAACCTCTTCCCTTTCACAGCCTTGCTGTAACTCTTGCTTCAGCTGTTCGTTCCACTCCAACATCTGGACATTGTTATTTTGCAATGTAATGAACTCTGCTGCCCTAGTTTCCAATTCTTTCTCAAGGGCACGCTTCTGCAAATTCAGATCTCTGAGTTCCAATCCTACTTGCAACATAACTGTTGCGAGAACTGTCAGCTCAGTGTACATGAGCCTGTTTGCATCTTCACTTTGCTCTTTAAGTTTCATGATGTTGGAGGCTTCATCTGAGACAGTCTGCAAAATAATTTTGTCCTCCGCTATATTAGCAGGACCTAGATCCTTGCATATATTTAGGATCTTCATGTGCTGTGAAATCCCTTCTCTTAGTTTCTCAGTATGAATTAGCAAAAATTTCCTCTCATCTTGATGATATCTGGCTTCATCCTTCATCTGTGAAATTAACATCTCTGCGGCATGATTTGCCTCTGCAAACTTTTGGCATTCATTGAAAAGATCAACGTTCTTGTCTTTCAAATCAGCCAAACAGTTCTCCAAGATCACTACATTAATAGATGCACTCATGTGGTTCTCCTGTTCCTGTTCAAGCAACTCATTCATGTAATAGCTTTTCTTTTGCAGAGAAGAGATCTGCTCCTCAAAGTCATTGACTTGTGTTTGATGTGACTTAACAAATGCTTCATATTCTTCATCCTTTACTCTTAACTGATCCTGCAATTCTCTTACTTGATCATATGCAAGATTCATCTCTCTTGATAAAGAGGAGCTCTTGTCTTCCAAATCAGCATGTTTACTTTCCAGGGCTTTCATAACCACTGTAACGCTCTCCAGCTGAGAGAACACATTGTTCTTTTCATCAGAAAGAGCTGAGTTATTTGCAAGGTGAGCCTGGCAGGTTTCTTCAGAATCTGTCAGCTTTGTTCTCAAATTTTCAATCTCAGCTTTCATATCAGATATTAAGATATCCAAGTTAGAATTTTTCTCTGAAATATCAGCATAACTTTTACCAAGAGTTTCTAGATCTGATGTAAGGATAGCCTTTTCAGAAACGTGAGAGGAAATTACATCCTTCAGAGAGCCTTCTGAAGTTTCTAACACTTTAATCTTCTCCCTCAGTGAATCCATTTCAGCATTTGCATCTGAAAGTGAGTTCTCCATGAGTGAAAATTCTTCAGAAAGCTTCTCCACCTCTTGAACCTTTTCTGAGAGAAGTGCCTTTTCTACCTCATTCTTCGCACACACTTCCTTCAGTTTTAAGTTCATGATCTGCAAGTCCTCAATCAACTTCTGGTTTGCTGCTGATCTGCTTTTTAAAGTACTCATTTCCTCAGCGAGAGAATGGTGTATCCCCTCTAGATTTTGCTTCTCTTCTTTTTGACAAGCAAAGTCTCTCTGAAGTGCTTCCTTTTCGCCTATATGTAACCCCATTTCACTCTCAAGTTTCACATTCAATTCCTTCAGGGCATCCAACTCATGATGAAGTTCTTTTATCATAAGTTCAGTGGAAACATTCTTTTCACGAAGGACATGGATATCCTGTGTGTGCTTGGCTACGATATTCTCAAGATCTGTATTACTGTTCTCCACCTCACTTAACTTCACTTTCAGCTTCTTAGTTTCCAGGGTCAACCTATTCACTTCCTCCTGAGACTCAGAGTTAAGATTCGTCATTGCAAGGAGAGCTGCTTCACCTTCACTGCGCTTATGGGCTTCATCTTGTATGCTGATTTGGAGACTATCCACTTCTTCTTTCTTATGTTTGAGTTCCTGCTCCAGCATCTGTACTTTCCCTTCAATTTTCTCCAGTTGAGCCTGCAACTTTGAGAGTTCAGACTCCAGATCAGATATTCTCACCAGGGACTGCTGGTTCTTAAGATCGGTAGCATCTTTCTCGGCATTTAGAAGTAAGATGGTGCTATTAAGTTCAGATGACAAGTTTTCCAATTCATTCAATTTGAAATTAAGCTTCTCAATCTCTAGATGCAATCTATTCACTTCCTCTTGAGACTGAGAATACATACTCTCCATTGACATGAGTGATGTTTCAGCTTGAACCCTCTTCTCAGTTTCGTCTTTCAGGCTCAACGTCAGGCTGTCCATACTTTCACTCTTCTGTGTGATTTCTAGCTCCAGTAGCTGCATTTTCTGTTCAGAATTCTTCAGTTCCAACTGTGTTTTAGAGAGCTGTAGCTCCAACTCAGATATTTTCGCCAAAGATTGCTGTTGTTGCAGAAGTACTGCATCCTTCTCAGAGTTTAAATCTAAGATTGTGCTTTTTAACTCTCTTGATGTGTTTTCCAGGTCTAACTTTGCATTTTCCAACTCTTCCAGTTCCTTTGTTGATCTGTCAAGATTTTCTGTCAGCTTTATCACTTCCTCTTCCAACTGAGAATGCAGATTCTTAAACCTGTGAAGATCTGCTTCAGTTTGTGTGTGCCTATTGCATTCATCTTGCAGCTGGGCATGGGCACTATCTGCTTCCTGTCTCTTCTGTTCAAGATCTTGCATCAGCATCTGAACCTTCTGTTCAATTTCTTCCAGCTCAGGCTGTAGCTTCAAGAGTTGAGATTCCAGATCAGATACTCTTTCAACAGACTGCTGGTGTTGAAATAGGGTTGCATCCTTCTCGGTGTTTAACTGTGAAATGGTGCTCCGAAGGCTTTGGATTTCATTTTGAAGTTCGTTCTTTGAATCCTTCAGAGAATTAATTTCATCGCGAAGTTCTTGTATAAGCAGCTCGGAGGAGCGGTTTTGTTCAGTAAGATTCTCGACTTCTTTCTTCAACTCAGAAACAGCATTCTCAAGATTTACTTTGGTCTGCTTGAGCTCATTCAACTTTTCATTTGCCATCTGGATTTCCTTAGTCAACCTTTGTACTTCTTCTTGACATTGAGCAAGTTCTTTCCCCTCTGAAAGCAGAGCACTTTCAGCCTGCATGCGCTTATCTTGTTCTTCCTGGAAGGTTAAGTTGAAGCTTTTCAGTTCTTTCTGCTTTTGTTCAAGTTCTTCTTGCTGCATCTTCACCTTTTGATCCAAAGCCTCAAGCTCAGACTGTATTTCACTATTGCGTGCTTCAGCGCTACTCAGCTTCTGAACTTCTGTAGCCATTTCATCAGTTAGCTTCTTGAGGTCATCCTGGGCCTTAGAGAGCTCAGACTCCAGAGTAGATAACCGCTCAGTGGACTGATTATATTGCAGCAGAGACGTGTCTTTGTCAGAATTCAATTTCAAGATGGTATCCTTTAGAACCTGGATTTCATTTTCAGCTTTGTTTGCCCTCTCAGATTCTGATAATATCTGTTGTTTCATGCTGTTGCTCTCAGCTAATAATCTTGAAATCTCTTGTTGCAAATTTACCATCTCATTGCTGATGGCATCACTGCCTTTAACTTCTGGGCTTCCAAAGCTTAGGCCTTTACGCACTTTCACATCAAAACCTTTTCGATTTGGCAGTGCACTGGCTTCCTCAGGGTGTGTACCATTCCTCTTGGAGGTGAATTGTTGTGGTGACACACCTACTCCATCCTTCTGCAGGTCATCCAAATCAAAAGGGAGACGGGTGAAAGTGGGCAGGTCTGGAGTATGTGGTTCCACTTCTTGGCCCGAAGAAGCGGGTGACTCATCAGACATTGGTGGCATCTGATTGGGAAATGCTTCAGAAATTGATTTATGGGCCTGTCGAAGTGCACCGGTGGCCTGATCATACCTTTCTGCCAATGCACGGTAAGCTCGGTAGAACTCCTCCACCAGTTTCATTAGCTCTGGGCGTTTCTTGTAGTACATCTCTGCTCTTCGTGCAAAAGAATCAGCATCTTCATTGAGAAGTTTGATCATAGCTTTAACCTTTGAATCCATGTCATTGAGATTTTCTTGGAGCCATTTGGAGTTCTTGGGGCTGATATGACTAACCCACCACCATGAATACTGCCTCGCGTCATGACCGACCAAGGCCGCCATTGGTGCCACAAAAGCAAAACTCCAAACAATAATTAAGACCTCACTTCCTCAGCACTTGAATTATGCAACAATGCAATATTCTGCAGCTCCCAAAGCTAAGAACTGCCTTAATTTTTTTCCCCCACTCTTCAGAACAGGAGCGAAACCGAAATTAAGAGAATGAAAGGCACAGAGAACAGCCAAGGTTCTAATTCTCCAATTAATTGAAAGGGCAGGAAGATACACTGGCAGGTCGCAACTCCCTGAAACAAGTGGAATCCCAGCAGCAGCAAAGCAAAAGCAGTGGCCTCCTTGGATCCACCAAGTCGCCTCCTTTCTTCCTCCTCCTCCTCCTCCTCAACCCATCCTGCCTCCCCTTCTCTCACAGTCTGGAGTCTGGCTTCTTGCTCTGCGCTGTGCAGTGCT

Coding Potentia
Explanation CPC Score
noncoding -1.04769
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0071800.1 10 14908103 C T
Osa10LNT0071800.1 10 14910745 A G
Osa10LNT0071800.1 10 14910753 A G
Osa10LNT0071800.1 10 14905473 T C
Osa10LNT0071800.1 10 14905853 G A
Osa10LNT0071800.1 10 14905951 T G
Osa10LNT0071800.1 10 14907491 T G
Osa10LNT0071800.1 10 14907770 A C
Osa10LNT0071800.1 10 14908661 A G
Osa10LNT0071800.1 10 14908918 G A
Osa10LNT0071800.1 10 14907985 G T
Osa10LNT0071800.1 10 14905419 C G
Osa10LNT0071800.1 10 14912533 T C
Osa10LNT0071800.1 10 14911094 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0071800.1 osa-miR5532 Cleavage 5.0 19.245 1 22
Osa10LNT0071800.1 osa-miR5532 Translation 5.0 20.408 1 22
Osa10LNT0071800.1 osa-miR5793 Cleavage 5.0 19.058 1 21
Osa10LNT0071800.1 osa-miR5804 Translation 4.5 17.523 1 21
Osa10LNT0071800.1 osa-miR5804 Cleavage 4.5 11.497 1 21
Osa10LNT0071800.1 osa-miR5804 Translation 5.0 14.956 1 21
Osa10LNT0071800.1 osa-miR1319b Translation 5.0 13.006 1 24
Osa10LNT0071800.1 osa-miR2873c Cleavage 4.5 12.192 1 21
Osa10LNT0071800.1 osa-miR2873c Cleavage 5.0 12.631 1 21
Osa10LNT0071800.1 osa-miR6255 Cleavage 4.0 13.168 1 22
Osa10LNT0071800.1 osa-miR167a-5p Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167a-5p Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167a-5p Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR167b Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167b Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167b Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR167c-5p Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167c-5p Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167c-5p Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR396c-3p Cleavage 5.0 11.742 1 21
Osa10LNT0071800.1 osa-miR167d-5p Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167d-5p Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167d-5p Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR167e-5p Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167e-5p Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167e-5p Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR167f Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167f Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167f Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR167g Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167g Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167g Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR167h-5p Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167h-5p Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167h-5p Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR167i-5p Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167i-5p Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167i-5p Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR172a Translation 4.0 12.739 1 21
Osa10LNT0071800.1 osa-miR172b Translation 4.0 12.739 1 21
Osa10LNT0071800.1 osa-miR172c Translation 3.0 12.739 1 21
Osa10LNT0071800.1 osa-miR172d-3p Translation 4.0 12.739 1 21
Osa10LNT0071800.1 osa-miR167j Cleavage 4.0 17.966 1 21
Osa10LNT0071800.1 osa-miR167j Translation 4.5 17.043 1 21
Osa10LNT0071800.1 osa-miR167j Translation 5.0 9.799 1 21
Osa10LNT0071800.1 osa-miR415 Cleavage 4.5 19.303 1 21
Osa10LNT0071800.1 osa-miR415 Cleavage 5.0 21.89 1 21
Osa10LNT0071800.1 osa-miR426 Translation 5.0 19.547 1 21
Osa10LNT0071800.1 osa-miR528-5p Translation 4.0 15.715 1 21
Osa10LNT0071800.1 osa-miR528-5p Cleavage 5.0 22.986 1 21
Osa10LNT0071800.1 osa-miR530-3p Translation 3.5 15.764 1 21
Osa10LNT0071800.1 osa-miR530-3p Cleavage 5.0 19.147 1 21
Osa10LNT0071800.1 osa-miR530-3p Cleavage 4.5 18.588 1 21
Osa10LNT0071800.1 osa-miR529b Translation 5.0 18.767 1 21
Osa10LNT0071800.1 osa-miR1424 Cleavage 5.0 23.56 1 21
Osa10LNT0071800.1 osa-miR1424 Cleavage 5.0 22.078 1 21
Osa10LNT0071800.1 osa-miR1426 Translation 4.5 12.226 1 21
Osa10LNT0071800.1 osa-miR1436 Cleavage 4.5 16.41 1 21
Osa10LNT0071800.1 osa-miR1439 Cleavage 4.0 15.245 1 21
Osa10LNT0071800.1 osa-miR1439 Translation 5.0 17.576 1 21
Osa10LNT0071800.1 osa-miR1860-5p Cleavage 5.0 22.847 1 21
Osa10LNT0071800.1 osa-miR1860-5p Cleavage 5.0 23.776 1 21
Osa10LNT0071800.1 osa-miR1861b Translation 4.5 12.956 1 22
Osa10LNT0071800.1 osa-miR1861f Translation 4.5 12.956 1 22
Osa10LNT0071800.1 osa-miR1861i Translation 4.5 12.956 1 22
Osa10LNT0071800.1 osa-miR1861l Translation 4.5 12.956 1 22
Osa10LNT0071800.1 osa-miR1863a Translation 3.0 18.629 1 24
Osa10LNT0071800.1 osa-miR1871 Cleavage 3.5 18.207 1 24
Osa10LNT0071800.1 osa-miR2092-5p Translation 4.5 19.596 1 21
Osa10LNT0071800.1 osa-miR2092-3p Translation 4.5 16.863 1 22
Osa10LNT0071800.1 osa-miR2095-5p Cleavage 5.0 15.914 1 22
Osa10LNT0071800.1 osa-miR1863b Translation 4.0 18.629 1 24
Osa10LNT0071800.1 osa-miR2923 Translation 5.0 14.445 1 22
Osa10LNT0071800.1 osa-miR2928 Translation 4.5 17.566 1 20
Osa10LNT0071800.1 osa-miR812k Translation 4.0 17.855 1 24
Osa10LNT0071800.1 osa-miR812l Translation 4.0 17.855 1 24
Osa10LNT0071800.1 osa-miR812m Translation 4.0 17.855 1 24
Osa10LNT0071800.1 osa-miR2873b Cleavage 5.0 21.05 1 21
Osa10LNT0071800.1 osa-miR5150-3p Cleavage 3.5 23.886 1 24
Osa10LNT0071800.1 osa-miR5151 Cleavage 4.5 12.219 1 22
Osa10LNT0071800.1 osa-miR5339 Cleavage 4.5 9.959 1 21
Osa10LNT0071800.1 osa-miR5497 Translation 5.0 13.721 1 21
Osa10LNT0071800.1 osa-miR5504 Cleavage 5.0 11.842 1 21
Osa10LNT0071800.1 osa-miR166l-5p Translation 4.0 12.415 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0071800.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0071800.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0071800.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0071800.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0071800.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus