>Osa10LNT0071900.2

GGGCTATCCATCCACGGATCCACCATCCACATTCCCTAACCTGCCCTGATTTTGCATGCAGTTCTGAATTGATTATGTCTTCTGCTAATGATTGGGGAGTGCCACAAACTGTCATGACTCATGAGCTGGGGGCTGCTGCTCTTTTCACAGCATCATGTCCTAGCTGCCCTGATAACTGATCTCACCTCCCTCAGGTCAGGATCAAAAAGCCCCTCATTCTGGTCTATATTGGATCGGAAGGCAATGGAGTGAAAGTGTCACGCAACCAAGATAATTAGCTTGTGATCCTACTTTTAAGACAAGTACGTGCAAAAACACCATCAATTGGCTCACAAGTACGCATGCACGATGAAGAACAAAAGAGCAAAGTGCTTATTATTCGATCCGGCACGAATCTCGAGGCACGGAAAGTAGTGATATCAGCACGACAGCACCTCACCTTCAACTTACAGCCTTCCAAGGGAAATAAATCCATAGCTCATATCCGCTGTTGCCTCAACAAGAAGGCCTACTGCTACTTCACAAATACTGCATTCTTTTCTCCAACTTAGCTGTAGTGCTTTGTCATGAAGAATTATGGATCAAAATGCACCTGCTTTTGATCAAATGGTAAATGCAATTTGAACTACATGAAAAGAGGACGCCGCGAAAACAAAGCTTCAGTTGGTACCCATAGCCAAAGAACATTTCAGGAGCACCCTTTTTTTTTTTTTTTGGAAATGGGAGTTTTGCTTGGAGAGAGAGAGAAGCAGCCGGGAGAAGCAACTGTAGGGTTTTATCCTCTCTAAGAGCAAGGATAATAATACAGCTAGCTGCTTACTGTATAGATCTTTATAGTCTATCTCTTAACTCACTTATATAGTGGTTAACTCTTCACTATAAATATATGGCCCACCTGTCTGTATCACAGATTTTCTTGGCTCCTGCGCCTAAGCCGACTGTAAACTTACACCCCGCTTCTCATCTCTCTCCTCTGCTCTCTCATCCACCTCAGCATTCAGCCTTTTTATAGCCCTCTTACTTGCTCTAATCAGTCTAATGTATGGAGAAACTTCACTCTGCATTTCTGTTGTTCCTTTATCAACAAATCGCCCCTTTCACCAATTGAGCTCATAGTGTTTGTGGCTAAGAAACCATATATTTCATATGCACCAGGCCCATTTGGAAAAGAAGCCTTCTGCCTTCATGTATGTCACTTTGTGACAGAGGTTTCCATACAGTGGTGTCCATCCATACAGTGGTAGCAAACCATGCTGATACCAGAACATCTCCTATGACATACAGTGAACAAAAGCAGCAGAGCTATCTACCAGGCTTAGTGTTTTCAAGGACCTGTGCTCTGTAGTTTTCATGTTAATCCAATCCATCTCTTGAAATGCAATGCTGCTTCCCTCCGTTTCAGTTGTGCTTCTGTTTGCACTTTAGGAGCCTTACCTTTGTACAATGTTCTGTGGTATTTAAGCCACAGGGACTTGTACTTGTATTTGTCTATAAACATCTTGCCTTTTTCCATCATTTCTATAACTTCCATGGCTCGAAGGAAGAAACCGCCTCTCACAAAGCAATACAGCAGAGAGTCCAGGAGCTCTTGATCAAAATTCATTGAACTTGAGGTGGCCAAAACTTTCATTTCACCCCACAAATCTGTCACCTCTACATATTTACCACCAACAGCAGCATAACCAGTTACTAAAGAATGGAATGTCTGTGCATTTGGCGTGTGTCCTAAAGCTTTCATCTTGCCAAGTGCTTTGTGAGCATCATGCATCAATCTCTTCTTGCAGAAGAAATGGATAACATTATTCCAGTCATGAATAGCATGATTAACCGGGTGGCCACTTCTGACTTCCTCCACTAGCTTAGTTGTCAAAGCAGCTCCATTGTTATTGCAGCCTTGTACTAACATCTCAAATTCATTCTGACCAGCTTTCAAAATATTCAAACTCTTCAACTCTTTAAAAAGATTGAGAGCACCTGTGGTATTATTGTGATGTGCTCTGGATTGTATCAAATCCTCATAGCAGCTTGGATCAAGCTGAATACCTGCTTGTTGAGCGTCTTTCAGAAGTGCAGCTATGTCATCTTCATGATGGCCCTCTTTGCAATATGCCTTTAGGAGAGATGAATAAATGGTAGAACCAACTCTAATTCCAGAAAATCTCATCTCGTCAAGAAGGTCATGTGCTTGCTCTAACCACCCAAGAGAAATACATGCATTTATCACTTGAACAACAAAGGAGCTTTCAACAGAGACAGGAGAATCCTCTTTGCTTGCTTTCACAAGAAATGATGCCAATGCACTGATCTTGTTTGCTTCCAGAAAAGCTTTAACAAGCTTGGCATACATTGTTTCAGTTGGATAGAGGATACCATATTCAGATTTTACTAGCCCAACTTGTTCCTGAAGCTTATCTGATAATAGCTTGAGTAATTCTCTCGCATCTAACTCAAGCCTTGCAAAGCTCTTATCTTTGAAGAATGAAATATAGTTTAGCATTTGACTGTCAGTACATACAGATTTGTTCGAGGAACCTGAATTAACAGGCTTGGTTTTCTCATAAGGAAGATAAATTTTGTTGTTTTCAACTGCTTCAAGAACTGCTTTAGCTGCTTCAAGTGAACGTTTCGTATTTTTACCCTTTTTAAGCATATCCAATATCATATCCACTGCAGAATCCAGATCTCCAAATTTCAAGTGGCAGGAGAGCAAGCAATCATAAAACTGCCTGAGCTCTGATTCACTAAGGCCACAGGCCTCATTAACATGTCTCCTCAGCTTCTGGATCTCATCTCTGTGCCCATTCTGTTCATATATCCGGGCCATAACAATCAACGAGCTGACGTCAGGCTTCAACCCTATCCTAGGCATTAATTCAAGAAGCTGCTCCGCCTTTTTTGTAGTGCCAAACAGAAGGGATGCAGTCAGAATTATGTTGAAGGTCAATGAATTGGGCTTCATTAATAGCAATGGACGGTTGCTCTTCTTCCGTGGATCAACCCTATTATTCTGGAAAAGGTAGCCAATCTCCATTACCATGTCAGCAGCAAGAAATGCACCAGTTGCAGTTTGGCACATATGCGCCACGATAGCCGACCATGCTGCAACAGGTGGGTATGCTTCCATCTTTATCAACTTCCTCACAACATTTATAGAAAGATTAGGAAGAGAAGACCGTGCGAGTGCAAGAGAGAGGAAAATAAGGGGCTCCTTCTCCAACAGTTTGCTCTTCTCTTCAAATGCATGATTAACCACATTGTAGGACTGGTTCAGCCAGTGAGCATCACAGGTCTCTGCGAAGCCAGTGATGAGCTTACTCAAAACAGACTTTCTGGGGACTCCATCCATGTGAATATGCTTCTCATAAGCCCTCCATGCATCATCAAACCTCTGCTGATCAATTGCATTCTCTATCTCCAATGCTAGCAGGGATGGGTCATGAGCTTGGACCAGAATTGTTTCAGTAAGAGTTGATAAGCATGGACCATAACTACCAATATTTAGCTTTGTGTTCAGGAACCCAATTGCACCAGTCCGGTTAGTCCAACAACACTTGGAGCCCAAGAAATGTGGGCTTTCATGACCAATCAAATGTCTTGGACCCACCAGGAATGAAGAAACAGCACGGGTTGAAGATCTTGAACAAATTCTCCCAACACGAAGCATTTGCGAGTAGGGGGCAAGCACAGGCTAGGTGCCCGCGCAGGGTGGCGCTCGGCCGGCGCCCAGTGGGGGCAAGCGAGGGCCGGCAGGCTGCAGCCTTCACCCTGCCACG

Explanation	CPC Score
noncoding	-1.18754

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0071900.2	10	14953114	T	G
Osa10LNT0071900.2	10	14953486	G	A
Osa10LNT0071900.2	10	14955443	C	T
Osa10LNT0071900.2	10	14955673	T	C
Osa10LNT0071900.2	10	14955755	C	T
Osa10LNT0071900.2	10	14955920	A	G
Osa10LNT0071900.2	10	14956240	T	C
Osa10LNT0071900.2	10	14956306	A	G
Osa10LNT0071900.2	10	14959085	T	G
Osa10LNT0071900.2	10	14953389	A	G
Osa10LNT0071900.2	10	14957323	C	T
Osa10LNT0071900.2	10	14953283	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0071900.2	osa-miR5532	Translation	4.5	23.807	1	22
Osa10LNT0071900.2	osa-miR5827	Cleavage	5.0	17.868	1	21
Osa10LNT0071900.2	osa-miR818f	Cleavage	5.0	8.578	1	21
Osa10LNT0071900.2	osa-miR166b-5p	Translation	4.5	22.646	1	21
Osa10LNT0071900.2	osa-miR164e	Cleavage	5.0	11.937	1	21
Osa10LNT0071900.2	osa-miR166i-5p	Cleavage	4.0	16.044	1	21
Osa10LNT0071900.2	osa-miR166i-5p	Cleavage	5.0	23.823	1	21
Osa10LNT0071900.2	osa-miR396e-3p	Translation	4.5	24.289	1	24
Osa10LNT0071900.2	osa-miR528-3p	Cleavage	3.0	21.697	1	21
Osa10LNT0071900.2	osa-miR814a	Cleavage	4.5	19.673	1	22
Osa10LNT0071900.2	osa-miR814b	Cleavage	4.5	19.673	1	22
Osa10LNT0071900.2	osa-miR814c	Cleavage	4.5	19.673	1	22
Osa10LNT0071900.2	osa-miR1429-3p	Cleavage	5.0	12.873	1	21
Osa10LNT0071900.2	osa-miR1869	Translation	4.0	22.036	1	24
Osa10LNT0071900.2	osa-miR1869	Cleavage	5.0	14.202	1	24
Osa10LNT0071900.2	osa-miR2120	Cleavage	5.0	13.638	1	24
Osa10LNT0071900.2	osa-miR812o-3p	Cleavage	4.0	12.802	1	24
Osa10LNT0071900.2	osa-miR3981-3p	Cleavage	5.0	21.59	1	21
Osa10LNT0071900.2	osa-miR435	Translation	4.5	18.282	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0071900.2	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583
Osa10LNT0071900.2	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0071900.2	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386
Osa10LNT0071900.2	10	qSPB2-1	Morphological trait	Panicle/flower	C1633	RM239
Osa10LNT0071900.2	10	qSPBp10-2	Morphological trait	Panicle/flower	C1633	RM239

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus