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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0072400.1

GTGTGGACGAGGATAAATAATGGAATAAAATCCCTGTAATAAGCATAATTGGGAAGCTCAGGATATTGATTAACTGTGCTGATAATTTCTGCGCTGAACTTTCACTGCTTGCTAGCCAGAGTGATGTCGGAAATCACTGAGATGTTCTGAGATGTTAGACAGGAACTCACGGGGGTGTGGACTGATGATATGGAGTATTGTACAGGATTCAGCAACTACTGTAAATCTGTAATTCAGTGTTTCTTCCAACAAGCAACGCGCAAACAATGTCGACGAAGATGGACACTCCCCTGTTGTACTATCTGATAGCTCCAAGCAGATTTGCACCACCGAGCTTAGCACCAGTTAATTGAGTTTCACGTAAATCAACTTCCCGCAGGTAAGCTCGCTGAAGATTTGCACCTTGCAAGTTTGAACCAGACAATTTAGCTCCCTTCAGATTGGCTCCTTCAAGGTTAGCTCCTGTCAAATTGGCACCTGTAAGGTCTGCCCTCTGCAGATGTGCTGAACGAAGATCTGTTTCAATGAAGCTACATTTTACCAAGCATGCATCTTGCAGGTTTGCACTTTGTAGGTTGGCTCTGTCCAAAGTAGACTCTTGGAGATTTGCTCCTACAAACTCACACGCAAATTAGCATAATTGAACGAAGATCGAGAAGCTTGAACCTCCCGAAATTTAGCTTTGTAAAGATTGGCAAGGGAAAATTTTGTCTCCTCAATACACCCGCAACTGAAATCAACTTCCGATAAGTCAAGCTTGGACAGGTCAAGGCCAGAAAGGTTGACGCCTCGGAACCGGACTTTATCAGCCTGGATGCACTTGATCACGTCCTTGCGAGTCAGCTCGGCCTCTGAAGATCTTCCAATCTTATCATCCCAATCCTCAATCCTTTCACTTATGCAATCGATCAATCCAGGAAGCCGGTAGTACTCCGCCTCCCGCAGCAGCTGCCGGTACTCGGCGTCGGCGAGCGCGGGGACGGCGCCGTCCCTGAGCCAGTTGAGCACGTGCCGGAACAGCTCCCCGTCGCGGTCCACGAACACGGCCCCATCCTCGGTGGTGGGGAGGCCGTGGGCGGCGGCGCCGGAGAGCGCGGCGGCGAGGAGCGACCCGGGATCCCGCTGCGTGAGCGTGTCCGCCGTCGTCTCGTACCTGCTGCCCCCGATGTTGAGGAGGATCGGCGGCTGCATGGCGGCGAGCGGCGCGGGCTCCGGATCTCGCCGCGCTTCGCTCTTGCGGTTTCTATGGCGCGCGCCGGCGCTGGGCCCGCGTCCCGCCGCGGCGGCGGCGGCGGGGGAAGCCGAGAAGTGAGGCGGGTCGAGGAGGAGAGGTCGCGCCGGCCGAGCCGAGGGCAGAGCACGGTACGCGCAGCAGTTGCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.895223
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0072400.1 10 15690022 A C
Osa10LNT0072400.1 10 15690584 C G
Osa10LNT0072400.1 10 15691076 A G
Osa10LNT0072400.1 10 15691141 T C
Osa10LNT0072400.1 10 15691580 T C
Osa10LNT0072400.1 10 15692011 A G
Osa10LNT0072400.1 10 15692037 G A
Osa10LNT0072400.1 10 15690184 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0072400.1 osa-miR5789 Cleavage 5.0 20.573 1 21
Osa10LNT0072400.1 osa-miR5793 Translation 3.5 21.825 1 21
Osa10LNT0072400.1 osa-miR171f-5p Cleavage 4.5 17.024 1 21
Osa10LNT0072400.1 osa-miR5519 Cleavage 5.0 14.115 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0072400.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0072400.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0072400.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus