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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0072600.1

GGAGTACACTTCAGCATCTTCTTTTCACAAAAATATTATCAACTCGTTGAGCTACAAACAACTCTGCTAATTTGCAGCCTCAGGTTGAGCTATCACAGATCAGCACCGATGAATTTGATATGTACAGAGACCCACCGGTATGAACAAAAGAGTACAGTTTCACTTGATACGGTACTCGTAAATGTCAAGGTCAACCACATGGAGCACTACAAGTGGAAGCTTACTTATGAACATGAACAGGCGCCTAATGTTCTCCCTAGTCAACGTATCCATATCCACAACATCGCGGTCGTCGGTGTACAACCACAGGCTGCTCGGATTCACCTTCTTGAGGCAGGCGCGGCAGAAGGGGCACGACTTTGATTTGGTGTTCCAATCCTCGAAGCATCTCATGCACAGCGAGTGCGCGCAATCGGGCAGCACAATCTTGGCATTCACCTCGAGGCAGATGCCGCACTCGAGCTCCCTCTCCAAATCCACCTCCGAGACCCTCTCCTCCACCTTCCTGAACTTCTGAAGGCACAGCCTCCTCTGCTTCCTGTCGTCCAATTCAGTTATCCCACTCGGCAGCTGGAGCAGCGACGGGAAGATGACACCGTAGAATTGCCTGATGCTGGCCTCCCTCTCCCACTCCGGCAGAGCCGTGGTGCCATCGGCGTACACCTTGTAGATCATGATCTTGAGGAGGCCGAGCGCGCCGGCGAGCTTGCAGTCGATCCACTGCACGAGGAAGTGCGCGACGGCGCTGTACGCCATCCGCATCTGGATCACCGCCCCGTCGTAATCCCGCAAGAACTCCGACGCCAGCTCATTGGCGTGCTCGATGTCGGCCTCGAGGGCCTTGACGGAGTCCTGGAACCTCCTCCGCATCGCTGACTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGACGCCGACAAGCCAAGAACCCCTACCTAAACCTCGTCGTCGTCGTGCTCCGCCGCCCGCTCGGCTCGCCGCGGGTGATTGGGTTGAATTGGAGTGGATTTTGCCTCCTGCGCTTCTCTCTCCGGATTCGGATTGGTTTTCTTCCCTCGCTTTTGGTGCTCGTCGCGTTGCCGAGTCCAACTCTAATCCGAGCCCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.75857
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0072600.1 10 16084739 A C
Osa10LNT0072600.1 10 16085158 C G
Osa10LNT0072600.1 10 16085229 A T
Osa10LNT0072600.1 10 16085585 A G
Osa10LNT0072600.1 10 16086129 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0072600.1 osa-miR1848 Cleavage 4.0 24.493 1 21
Osa10LNT0072600.1 osa-miR2055 Cleavage 5.0 22.667 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0072600.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0072600.1 10 nan Resistance or Tolerance Drought tolerance RM596 RM271
Osa10LNT0072600.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0072600.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus