© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0005400.3
CGGCTGTTCCACAGCTTCACTTTAGCTCCGAGTTAGATCTAGTTGTTGGAGATCTGCCAAACAGGCTTGCAACAGGTAGCTTAGCTATACACTTGTCTCCTTTTTTCTGCTGGTCTCTGATCTCTGCTAGCTCCAGCATCTCCCGTGACCGGGAGGAATTCATCGTGACGACAGAGAGAAGAGACGCGTGCAGTTCTGAAGAAACGAAATGGATTGATGCATGCATAGTAGTTGCAGTACACATTTGAGCGCTATAGCTGGCCAGAGAATTAATGGTGGTGTACGTCGTGCTCCCTATAGCTCGCTTCTCGCTCGTCGTCGTCTCATCTTCTCTGGAAGTTGAGGTACTTGATGGCCAGGGCGAAGACGACGGCGAAGAGCACGCAGAAGCCGGCGACCATGCCGGCGACGACGCCGAGGAAGTCGTGGCGGAAGCCGAAGTGGTCCCGGAGGAAGTCGACGGCGGTGGTGGTGGTGATGCCGTCGGCGAGCAGCAGCGGCTGATCCAGGTCGCCGAACTGGGAGGTTAGCAGGCCGTACAGGGTCCATGACACCGGGTTGGCCCAGTAATACCACCTCCACCACGCAGGAATCCTCTTTCTTGGGATCATGAACCCACAGAAGAGATTCCACAGCGTGTAGAATGGAGCAGCAATAATAGGCGCAACAGTGTGGTTGGGAGTGATCGCCGTTGTCATCATGCCATAGAAAGTGAAGTACAGCAAGGTGAAGTACATGAAGAACAGGTACCACAAGAACTTCACTGCTGTCCACTCGAACGAGCCCAAGCTGTAGAAAATCGTGCCGTAGATAAGTGACTGCACAAGAATGTAAGGGAACTCCACTGTAACCAGGGAGAATGCAAAAGGCAGTGCCGAGTACATCCCAGCTGCCCTCTCTCTGTACGAGACAAATCTTTCGATGGAAATCACAGGTTGAACAGAGGTGGCGTTAGTGATTCCTATGAAGAGTACTGCTGCGTACATGGCACCCATGGCATTGAATATGTCATGTTGGGTCTCCCTTCGAGACCCAAATTTCCAGCAGATTGTCCCGAACATCAAGGAAATGATGACGGTGTAGAAGAATCGGACCGCAGTGTATTGAGGATTTCTCCAGTACGACAGGTTCTGCTTCCATAAGCAAGCAGCATATTGAGCAAAGAATGGTTGGGAATACTTGGTGGCAAAAGTAAGTTCTTTTGATTCTCTTCTTGGTCTGCTCAGGATATCAACCATTTCTTGGGTCTGCTGAAATAATTTTGACTGCCGGTAGTATTCAGCAAAATCCACTCCAAGAATTTGCTCCATTTGAGTACTTGTGACTTCCAACATCCATGCAGCAGGATTATAGCCATCCCTGATTTTAGGAACTCCTGGAATTGCCTCAAAAAACTCGACCAGATTGCGTGATTTCGAGCCCAAGGGACCAGCATATATAAGTTGCCCCCCACGCTTCATGAACAAAAGCTCATCAAATGACTCGAATATGTCGATGCTTGGCTGATGGATGGTGCACACAATTGTCCGTCCTGTATTAACAATATTCCGTACGGTTCTCATCACAATAGCTGCTGACCTAGCATCCAATCCTGATGTAGGTTCATCCATGAACACGATTGAAGGATTTGCCACAAGCTCCACAGCTATCGTCAACCTCTTGCGTTGTTCAGTTGACAGACCATTCACTCCTGGTAGGCCAACAAGAGCACCACTTAATGCATTTAGCTCAACAAGTTCCATCACCTCTTCAACAAAAACCCTTCGAGTGTTCACATCAACATGAGAAGGCAATCGGAGGCATGCAGAGTACAGCAATGACTCAATTACAGTCAAGCAAGGTGAATGCACATCATTTTGTTCACAATAACCAGAGATCCTAGTGAAAGTCTCTTGGTTTTTAGGATACCCAGATATAGTGATGCTTCCTTCTATTAGTCCTCCAGTTTTCCGGCCAGCTAAAACATCCATGAGGGTGGTTTTGCCAGCTCCACTTACTCCAACAAGTGCTGTTAGTATCCCTGGCCTAAATGCTCCAGTGACATCAATAAGCAACTGTAGGCGGTCTTCTACTATACCTTGACTTTTCAATTCCGCTGGTACATCAACGTAGTAGTTGATGTTCTTAAAGCACATAGAAAGGGGTTGAAATGGTAACACCATGCCCTTCTGGTCCTTGAGATTATGCCCATTCAATGAAGCTGAGTGCAGGTAAGATCTTAGCTCTAGGGCTAATTTGCCATTCTTCCTCCTAGGAGCCCTATGCTGAATATCATCTTTGGACACAACAGCTTGTATATTCCCAATAGGGTTGAGAAGAGTCAAGAACAATGTGAATAAGAAGTTCAAAACAATTGCATAACCAAACAATGCTCCAACCCCAATCCAGAACCAGTATTTCTCCTTGAATAATCCATATCCAGTGAGTATTGCCTCCCCTAATGTGATGTTCTGGTTTGCAAATTGCTGGCTCCAAGAATGGCCAAGGAATTCATTTACGGAAATAGCATTTTGTGCATACATCATAGGAGATATCCAATAACCCCAAATCCACCAGGCTGGTATGCTCTCTTTGGTTATAATGAATCCTCCAAGGATCATAACAACCAACAAAGCAAACGATCCAAAGGTGTTAGCGACTATCATGTTCCGACCCAAAGATGCCATGACCCGGAAAAGAGCCAAAGATGTTTGGTGTAGAAAAAAGAGCAAGAGAAATTGTCCAAGACATCTTGTAAATTGGGGATCATAGCCGACCACATAATATGTTACTAGTACCCACATTCCTGATTCAATAAGCGAGGTTGGAATGCTCAAGAGCCAAGACGGAAGTGTGTAAGCCCATGGAGGGTAGAAGTGCAAATCCCTGTGCTTGTAAAGAATTGGAAGCTTCGTGACCAAGAGTGAGACTTCAGTAAAGCCATTAAATAGAATCATCACTATTGCAAAATAGAGGGCTCCAAGATAAATAATCCCATCATCAACTGAGTCACGGTGCATTGTTGATCGGAAAAACACTGTCATTGTGATGAGGGCAACAAGTAAAAGCTGAATGAATTTGAAGACATAGATGAACGAATTCCTTTTCATCAGCAGATGCTGCCATTGAAAGTTGGACTTTAGAAGCTCAAGCCTCCTTACACCATAATTTGATGTTGAAAGAGCTGCGGGATGATTGCGATGTCTATTGTATGGAACTGCTAACTCATCGTGCAGCCTCTTGCCAATAACAAATGTTTTAAAGGCTTCAGCAAATTTTGATACAGAGACATACTGGTAAGGATAATCATAGTGGCACCAATATTGTTGCTGGTCTTTCTTGGACAAAACTTCTTGCAAGAAGTCAGCGACGTTTTTTCTTTCAGGACATCTGAATCCCATACCGGCAAAAAAATCAACAGCATATTCACGTGGTCCCTGATATACAATTTGCCCTTCAGATATGAGGATGACATCGTCAAATAGTTCGTAAGTTTCTGGAGCTGGTTGCAACAAGGATATGATTGTAGTGCCGTCAAGAGCATGAGTAGAATGCCTTAAATACTTGATAATCTGATATGTGGTTGCACTGTCAAGTCCAGTAGATATCTCATCCATGAACAGCACACGAGCAGAACCAACTAACAGCTCACCTGTTGTCAGGCGCTTCTTTTGTCCCCCAGAGATTCCTTTGATCATTTCATCACCAACAATTGTGTCCGCACAAATGTCCAGCCCTTCATTATATATTCTGCGACAAGGCTTGTCTGCTTCCCCTCAAGAGCCAATGCCTTCATGAACACATCAAGGTCCTCATCGGGTTTTATACCTTCATTCTTTTCTCTCCTCAAGAGTTCAACGAGCATATCATACTTTATTCCAACACCCTGACAGCGCCCAGCAAACTCTAAGGTTTCTCTGACCGTCATCTCTGAGGCATGCCAGTCTTGCTGACTGACATAAGCAGATGTTCTCTGGGGCACAAATTCATTCAGATGATGGCCGTTGTAAGTGATATTTCCAGACACCTTTAGTCCAGGGCCAAGCCGTCCGGCAAGGGCTAAAAGCAAGGTTGTCTTTCCTGAACTTGGAGGGCCCAATAGCAGTGTCATTCTTGATGGACGAATGATCCCACTAACATTATCCAATATCGGCAACTTCACTCTTCCCCCTCGATAGATCCTCAAATGCCTCAGAAATGCCTCTGTCATGTTGCAAATGAAGTTTGGGATGGTTGGCAGCGCCCTGCTCCCGACATGCACGTATGCGTCCACTGTCAGATCCTCGTACCTCACTTCGATCTTGGGGAACTCTATCTGCACTGCGTCGAAGCGGGAGCGGATGCGGCGGAAGAAGTCCTCAACGTCGCCGGAGTCGGCGAGGAGGCGATCGACGAGGGCGGTGCGGTCGCCGGGGGAGAGGCCCGCGACGTCGACCTCGCAGAGCGCGTCGTCGCCCTGGACCCGGTCCTCCCCCGGCGCGGGCGACCTGAGCAGGCCCCTCCTCGCGCGCGCCACCGTCGGCAGCCGCTGCAGCGCCGCCCACCGCAGCGCCTCCTGCTCGTCCTCCTCCTCCCTCCACGACCCCGACCTCGCGAACGCCGCCTCCGCCGCCCACATCTCCGCCTCCTCCTCCTCCCCGCAGCAGCAGGTGGTGGTGGTGGTGGTTGCAGCGGAGGAGCGGAGGTGGTGGGGGATTTATGGAGGTTGTACTGTGAAGCTGGCCATGGCCGCAGTGGCAATTGAGGCTGGCTGGATCCATCCATCCACCGACTCCCCCTCGCATTAATGGCGCGAGACGAGACGAGACGAGCTCGCCTTCTCTCTCCTCGCGTCGCCTCTGCTCTTGGTTTGATTTGATTTGATTTTTGTGCCCTAATTCTGTGGGGAAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0005400.3 | 1 | 4035288 | C | T |
| Osa01LNT0005400.3 | 1 | 4036278 | G | A |
| Osa01LNT0005400.3 | 1 | 4037707 | A | T |
| Osa01LNT0005400.3 | 1 | 4038058 | A | G |
| Osa01LNT0005400.3 | 1 | 4039221 | A | T |
| Osa01LNT0005400.3 | 1 | 4040788 | C | T |
| Osa01LNT0005400.3 | 1 | 4041468 | A | G |
| Osa01LNT0005400.3 | 1 | 4041820 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0005400.3 | osa-miR5143b | Translation | 4.0 | 19.463 | 1 | 24 |
| Osa01LNT0005400.3 | osa-miR5828 | Translation | 4.5 | 15.063 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR5829 | Cleavage | 4.5 | 21.432 | 1 | 24 |
| Osa01LNT0005400.3 | osa-miR6252 | Translation | 4.0 | 21.826 | 1 | 23 |
| Osa01LNT0005400.3 | osa-miR395t | Translation | 4.0 | 13.796 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR395t | Cleavage | 4.5 | 16.481 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR397a | Cleavage | 5.0 | 18.38 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR319a-3p | Cleavage | 3.5 | 15.491 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR169e | Translation | 5.0 | 16.737 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR390-5p | Cleavage | 4.5 | 21.255 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR395o | Translation | 5.0 | 13.203 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR395o | Translation | 4.5 | 13.796 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR395w | Cleavage | 4.5 | 12.141 | 1 | 22 |
| Osa01LNT0005400.3 | osa-miR395w | Translation | 5.0 | 13.203 | 1 | 22 |
| Osa01LNT0005400.3 | osa-miR1435 | Cleavage | 3.5 | 16.065 | 1 | 20 |
| Osa01LNT0005400.3 | osa-miR1879 | Cleavage | 5.0 | 13.327 | 1 | 24 |
| Osa01LNT0005400.3 | osa-miR2871a-3p | Cleavage | 3.5 | 19.402 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR2871b | Cleavage | 3.5 | 19.402 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR3979-3p | Translation | 4.0 | 16.628 | 1 | 20 |
| Osa01LNT0005400.3 | osa-miR3979-3p | Cleavage | 4.5 | 9.885 | 1 | 20 |
| Osa01LNT0005400.3 | osa-miR5143a | Translation | 4.0 | 19.463 | 1 | 24 |
| Osa01LNT0005400.3 | osa-miR5144-3p | Cleavage | 5.0 | 16.997 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR5486 | Cleavage | 4.5 | 17.629 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR5499 | Translation | 3.5 | 13.531 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR5499 | Translation | 5.0 | 14.645 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR2275c | Translation | 5.0 | 13.43 | 1 | 23 |
| Osa01LNT0005400.3 | osa-miR5521 | Cleavage | 5.0 | 14.773 | 1 | 21 |
| Osa01LNT0005400.3 | osa-miR440 | Cleavage | 4.5 | 15.56 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0005400.3 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0005400.3 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0005400.3 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0005400.3 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0005400.3 | 1 | gp1a | Morphological trait | Panicle/flower | RM1 | R753 |
| Osa01LNT0005400.3 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)