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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0072700.2

AGCAGCAGACATACATATAGATGCTAGCTTAAATTTACATGAAACATACGAGCCACATTAAGTGTCTATGATAGAGTGGCTATCAGTATAGATATAGTGGCATGTTAGGCAAGAGTTTTACATGGATAATATCTCAAGCCTATAGTTCAGCGATAGCAAAATGATATCTGTAGGACAAGGTGAACAGCTGTTTTTCACAGAACATCAACTGTCAGTGCAACGTGGGTTGCTTTGTAGAAAAGAAACATGCAAATTGCGTGTAGGTGTATGCCAATGTTTGCTGCAAAGTCCTTCCATCCTTTCTTTAGGTTGCAACGACCATCTGTTGATATATACATGAGCATGTTAATTGAAACACCCTGTAGTGTCTGGACCTGAATACCGATGGCTTTCTTGTTTTGAATCAGCGGCTTTATATATCTACCTGTAAATTCCTTACCAAAGTACTATAAAAGACATTATATGTGAGTTGTTTTATATAGCTGTAAGGACATGGAAAAATAACCAATGCAGCTAGAAGAGAGTAATAGCTCGGAGTGGAACTGACAACTCTGTCTTGTTTCATGAATGTAGAGTTCATAGTGACAATGTAAAGCCTGGTTGAAGGATGTATAGTCTGGGAAATATCTGTGATGTGCTTCATGTGAGATGATAGCTGAACATTCTGTGCTAAGGAGCACACATCATCAAATGTATGCCTGGTGTTGCCTGCATTGTATATTTTTGGTAAGCTTCTTTTATGGTTATTGAGAAAGGAGATGATACTGTAGATAAATTATTATGGCAAATTTTGTGGTTATGGGATGTCTTCCCCCAAAACTTCACTTTCGCGGTGTCCCTGAGCTAAAACCACACAAGTGTGATGTCCTGTAGCAAACTTTGCCTAAAAAAAAAAAGCCAGATTGAATCTAATCAGGTCAAACGACACTAATATCATATAAATCCTTCACACGGTACCTTCCTAGTCGAATCCCCTCATTCAAATCATCACATACATAGAGCATCAAATCCCAAGCCCACAAGAGAGTGGACAGGGATGAATGATCGAAAGCAAAAGATATGGTGAGGGATTAGGGCAAGCAGTAGGAACTTACCTGGGGTTTTACGGCAACGTTATTGGGCGAAGACCGGCTTATGGTGATCTTGGTGGAAATCGCATGATGGCGACTTCGGTGGTCAACGCGTTCGCCCGTTGGTTTCACTGCCGTGGCAGATTCCTTGTTCTTCTGTAGATGTCCAGAGCTTTGATAACCACAAGTTTTGTCATGTGAAAGAACATTTCCACAAGGGACCCGCCACCGGTAGCTTTGGCGGCGGGAGTGTAGGCTGCTGCTTGATGAGCGCAAAAACAATCGAGTCCTCCTGGAGCAAAGCATCGCGCTCCACCGCCAAGCTCAGCTCCTGATCCATCACCAACTATCTCTCTTTGAGTGTGGGGCCTGTGGGCTTTGCTGCATCTTAACAACAACGTCGGACTTCACTTGAGCTATTGAATCCCTCAGGTTCTGGGCTTGTGCAGGCCCCTGAGAGCCCCATCCGATCACTCCGATTTGCTTATTGCCCTTGAACGCCTCGGGAAGCAGCGGGAACAGGTTCATGACAAAATTACATATATACACACAAAAAAAAGGAAGCCAAAAAAAGAAGAGGAACCAAATTACCCACGTTTCCTTTCTTTGCAGACCTGAATAATTCACAACATACATATAGATGAAATGTTTCAGCTATACTGGCAATCCCAGCTCTTGGTCCTTTTTGCAACAACCAAACAGCGAGAAGAGCTAGGTCCAGAAGCTTCCCCGATTTGTTTTCTTCTGGTTTGTTCCTCTTACAGCATTCAAATCATTCATATACTGGACCACAGCCAGCACTGACAAGCATGAATCACACCTCTAGTGATCAACCCCTAGTAATCAGCCGCTGCAAGCCATGGAGCAGAACTGAAACTACTCTTCCGTAAGGCAAAACTACAAACACCTGGAGTGCAACACGAGAGAACTATCCATCATTTCGGACACTCGGAATCGCCAGGTTCTCCACGTGCTTTATCCCAAGCGTGGTGAGCTCTTGCAGAGATGTCGTGCAGCACGACACGTATGGCTGCGAGCTCCACCGCTTGGCCCACCCGAGCTCCTTCAGCTGGTCCATCGATGGTTCGCGGCGCGTGAGGAGGATTCTATCGGACACAGCGGCTGACGGCGCGTGAAGAGGCGGAGCCCCTCGTCCAAGTGTCCAACACAGCGACAAGGTGCGGATGGCGGCGGAAAGGGTGATGCCGGCTGGTGGGAGGACAATGGTTGCTCCACCAACCGCCTAACCATCGACAGCCACGAGCTCACCGCCATCAGATCAGGCGGCCTTGAGTTCGTGCCATCAGATCTGGCCACTGCGATGGCGGCGAGCGGCTAGGTCGGCCAGTTGACGACGACGGCGGCAGGTTGACGACGATGACGATGGCGGCGAGGCACAGCTCCTCGCAGGCAAAGGAGAGACGAGAGTGGAAGAGGAGAGGAGCGTTCGCCTCGTCGCTTTCTCCGCGTCCGCCTCGAAGTCCGCACTCGGCGACGACGGCGACGCGAGGGGGGAGAAGGAGGTGGAGGCGCTCAGAGACGGCGACGGCGACGTCGATGGCGGCGGAGGTGGAGGCGGCGGCGCTAGGGGAAGACGGAGGCGAAGGCGGAGGTGGCGGCGGCGGCGGAGGCGCGAGGCGATGCGGACGACGATGGCGGCGGCGCGAAGCGGAGGTGGTGGCGCGACCGCGCGAGGGGAAAGCAGAGGCGGCGGCGGCGGCGAGAGAGGGAGAGGGCGAGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.164247
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0072700.2 osa-miR5530 Cleavage 4.0 9.486 1 21
Osa10LNT0072700.2 osa-miR5825 Translation 5.0 13.678 1 24
Osa10LNT0072700.2 osa-miR395b Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395d Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395e Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395g Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395h Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395i Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395j Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395k Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395l Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395s Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395t Translation 4.0 17.812 1 21
Osa10LNT0072700.2 osa-miR415 Cleavage 5.0 16.092 1 21
Osa10LNT0072700.2 osa-miR395m Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395n Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395p Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395q Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR395r Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR1432-3p Cleavage 4.0 17.26 1 21
Osa10LNT0072700.2 osa-miR1428e-5p Cleavage 5.0 17.316 1 22
Osa10LNT0072700.2 osa-miR1428f-5p Cleavage 5.0 17.316 1 22
Osa10LNT0072700.2 osa-miR1428g-5p Cleavage 5.0 17.316 1 22
Osa10LNT0072700.2 osa-miR2105 Cleavage 4.0 14.996 1 20
Osa10LNT0072700.2 osa-miR395y Cleavage 3.0 17.812 1 21
Osa10LNT0072700.2 osa-miR5157a-3p Cleavage 3.0 14.383 1 24
Osa10LNT0072700.2 osa-miR5157b-3p Cleavage 3.0 14.383 1 24
Osa10LNT0072700.2 osa-miR2275c Cleavage 3.5 18.05 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0072700.2 10 nan Resistance or Tolerance Drought tolerance RM596 RM271
Osa10LNT0072700.2 10 nan Physiological trait Sterility C701 C16
Osa10LNT0072700.2 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0072700.2 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus