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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0073000.1

GTTCATCATAATTCAAACCATTCAAAATTTATTAGTGGTCAAAGTTACAACAGGATTGGTCAACAGTCACGAGTAAATAGAAATGGACGGAGTAATGTTTTTCCACTCTTGATGCCCTAAACAGTTTAAAGAATCCCTAAAAAGAAGGGATTTTGAAAAAGGATGAAGTACAAGTACATATCTAGGATTGATGTGAGTAGCAACATCAGCTCCTAATTTGTTCTTAAGTATACAAGTTATTCTTGCGACAACGGATTAAGCTGGAGACATAAAATACACAATCTTATCCAAAGAGAGATTTTATTTATAAACGCCTGTAATCGTCATCCGCACCTTCATCGAACACAACTGATGATCCCACCCGGAAATCGAGCTGCTTTTGATGCTTCTTCCTTCGACGTTCGTCAAACTCCTCCCAACCGTCCACCTGCCGAAGAACGTCGTTTGTGATTTCAGTGCCATGGAGATCAAGTGTAATGAGCTGCGAGCATTTTATGAAGAAAGCTGAAGGTAGGGATGTAAGACCATTGTTCCGTACACTCAAAGCCTTGAGATGTTGAAGGTTTCCAAAAGCCTCTGGCAGTTCAGCCAAAAGATTTGATGACAAATCAACCTCATTGAGAGATTCACAACCACCTATAGATGAAGGCAATGAAGTTATCCTATTATTATTTGCTATCAGAATCTCAAGATGCTTCAGTAACCCTATTTCAACAGGTAAGTTCTCAAGCCTGTTATTTGCAATACGAAGTTCACGTAAATGAGTTATTGAGCCCAAACTTGAAGGTAAAGTGACCAGCCGATTTTGGCTTAGAGATAAAACTGTTAATGTTTGAACACATGTTAGGCCTTCCCAGGAAATGTTCCCATCAGCTATATCATTAGCAGTCAGGATCAATTTCTGTAAAGATCTCAGAGCAGCAATTTCTTGTGGAATTGCTTCAATACAGTTGTTACTGACATCCAGTACTCTAATAGAAGAACCACAGCCCCATACTTCTTCAGGCACTGCCTTCAAGCTGGAATCAGACAATGCAATAATACCAGTTGCTTTCCAACGTTCAGGTCGGATTTTACTGACATTTGTATCCGACTTTTGTATTTGAGCTTCCTTCACATTTGAGGCTCTTCTCGTGCTTGGTGCTGGAACACTACTATTCTTAGTGATGGGACCGTCCCCCTGATGGAGCCCCTGCGAGGCCATGAGCATGACCTTGGATCCGTTCACCACCTGCATCGAGCTCAGGCTGGCGGCATCCGCCAGAACTTTCCCTTTGCAGATGAGCCTCTGGCCGCGGGGGAGGACGTTGGTGAGCGGCTGGAGGAGGCGCTTCAGGTCGGCGGCGGTGGCGGCGGCCGGGACCTCCACCGGGATCGTGCGGCCGCCGAACTTGACCTGGACGGTGATGGTCGGCGGCGGCGGCGGCGGCGAGCTCTCCATGGTGGCCTCCCTCCCGTCTCCCGTCCACTCTGCCAACTGCCTACTTGTTTGGCTGATTGCCCCTTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.717784
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0073000.1 10 16670805 C T
Osa10LNT0073000.1 10 16665989 G A
Osa10LNT0073000.1 10 16666177 C A
Osa10LNT0073000.1 10 16666395 A G
Osa10LNT0073000.1 10 16666473 A T
Osa10LNT0073000.1 10 16666527 G T
Osa10LNT0073000.1 10 16666725 A C
Osa10LNT0073000.1 10 16668277 G C
Osa10LNT0073000.1 10 16670734 C T
Osa10LNT0073000.1 10 16670969 A G
Osa10LNT0073000.1 10 16671359 A T
Osa10LNT0073000.1 10 16671848 A G
Osa10LNT0073000.1 10 16672181 C A
Osa10LNT0073000.1 10 16672582 A G
Osa10LNT0073000.1 10 16672956 T C
Osa10LNT0073000.1 10 16668679 A T
Osa10LNT0073000.1 10 16668728 T C
Osa10LNT0073000.1 10 16668776 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa10LNT0073000.1 DTM_#DNAt_MULE_japo_Os2269 Chr10 - 16668651 16669548 897
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0073000.1 osa-miR5827 Cleavage 4.0 13.742 1 21
Osa10LNT0073000.1 osa-miR6253 Cleavage 4.0 18.748 1 22
Osa10LNT0073000.1 osa-miR159f Cleavage 5.0 19.719 1 21
Osa10LNT0073000.1 osa-miR437 Translation 5.0 18.408 1 21
Osa10LNT0073000.1 osa-miR3981-5p Translation 5.0 19.86 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0073000.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0073000.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0073000.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0073000.1 10 nan Resistance or Tolerance Drought tolerance RM596 RM271
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus