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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0073100.1

GGGCTATTCAACTCGCTGCATACTGCGCCAAAATCACCATACTCCTCTTGGCGCAAAGTGTGTCTACCAAACTCGACGCCGATCGATTTTGCAGCTTTTGCTCGACGGCTAAGTTCAGAGGAAGCCGTCTCTGCATCTTGTTTGTCGCTCTCGATTTCATCCTTAGTTTGTGAGATGGATGCCAACTCGTCTCTGCTGCTGCTGCTCCTGCTGCTGAAATCAAACCGTGGAGCGCGCGGCTGCAGGGCGGCCGCAGCCTCTGGTCTCCCGGGTGTTGTAGGAGCTGCATCCGGGGCACTTCTGCGCCAGGACGTGGAAGTTCACGTTCGACGTCGCGCCGCAGTCGTTGCAGAGGATCCATATCATCTTCTTCTGGTAGAACTCCGGCATCGGCGTCGCGGCCACCTCCTCGTCGAGCTTCTTCCACGCGTCCGACATGTCGCAGGCCGACCGTGAGCACACCGGGCAAGCGAAGTGATGATGCGCTCTCATCACGTTCAGGCATTCCAGATGGATCGTGTGCCCGCAGTGCAAGACGCTGATGTCCTTCGTCGAGTCAAATAGGTACTCGAAGCAGACAGGACAGTTGTGATGCATTGCTCCTTCTACACAGTGATGAGAATCCCTCAAGACATTACTGTAGCAACACCCGCATTTGTCGCAGTGAAAGAACTTATCCACACCACCAGTTCTGCATATGCCGCATCCATCGCAGTGATACTGGTTCTTTGAGACATCATCATCAAAGAAGTTGCATTTTTCGCAGAAGTATTTCCCCATGCATGCCCCACAACCAGAACAGTACTGTTGTACCTTTCTATAAACTACTTACATCCTGTTCTTTGTCGCAGAGAGAGCAGATAACCTTCTTGATTTCGTGGCGGGGGATCTCGTGACGGTCATTGAGATGGATCTCGAGCGAATTCTTGGCCTCGTTGTGGCAATGCCTGCAGCCGAACACCTCGCCGCAGCACGGCGCCCTGATCCTGCATCCCCTCGTGTAATGCTCGCAGCCGTGCTGCTCCGACTCCAATTCCATCCTCTCTCTCTCTCTCTCTCCCTCTCCGAGCTCAACAACCAACGCGCTGTTTGGCTCTCTAGGTCTCACCGACGACGAGACGGCCGCCGGCGGCGAGGGCGAGGGGGGAGGGGAAGGGGGTGGTTGGCAACGGCGGGAGGGAAGGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.94278
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0073100.1 10 16705537 T C
Osa10LNT0073100.1 10 16705569 A G
Osa10LNT0073100.1 10 16707380 T C
Osa10LNT0073100.1 10 16707684 G A
Osa10LNT0073100.1 10 16708079 C T
Osa10LNT0073100.1 10 16705621 A G
Osa10LNT0073100.1 10 16705703 A C
Osa10LNT0073100.1 10 16705593 T A
Osa10LNT0073100.1 10 16705327 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0073100.1 osa-miR395w Cleavage 5.0 13.787 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0073100.1 10 nan Resistance or Tolerance Drought tolerance RM596 RM271
Osa10LNT0073100.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0073100.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0073100.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus