>Osa01LNT0005500.1

CCACCATTGCCAGCCAGCACCAAGAACACGACGCCGCAAATCACAACAAAAAAAAATAATAATAAAAACAACAAATCCGCGCTTGCAACGTGCGGGGGATCGCAAGAACGGATCGCCGAGTGCCAGGCGCGAAATGCGACGGATCAAGAACCCAACCCAAAGAAAGCACCTCACAAGAAATGGGCCAAAAAAGAAAAAAGAAAAAGGGGAAACGACAGGACACCTCAGGAAATGGCAGGAGGGCCAAAAATATCCGGCAATGGCGGCCTCGTCAGGGCCAGATCCGGGGGCGGGAGGCGGCCACCATGGATGGGATCTCGCGGGGAGGAGGAGGGGAAAGCAGTGGGGAGCAGTGGGG

Explanation	CPC Score
noncoding	-1.00247

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0005500.1	1	4071362	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0005500.1	osa-miR5529	Cleavage	4.5	20.334	1	21
Osa01LNT0005500.1	osa-miR2877	Cleavage	5.0	22.052	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0005500.1	1	gp1a	Morphological trait	Panicle/flower	RM1	R753
Osa01LNT0005500.1	1	nan	Physiological trait	Source activity	RG532	RG472
Osa01LNT0005500.1	1	qFLL-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0005500.1	1	qFLP-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0005500.1	1	nan	Morphological trait	Root	RM7383	RM243
Osa01LNT0005500.1	1	nan	Morphological trait	Root	RM7383	RM23

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus