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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0073300.1

ATTTGAGCCAATAAAATCCAGATATTTGGCTCGTGGTTAAAGAAAAAAAAAACCCAGTATAGATTTTACTCTCACAGATGGCCCTTATAATCAACATTGCGATTCAAAGGATCATTTACATATTTTCTTAACCTCACCAGTACATACAAATAGAAGGATCAGGATCGACATTGGGAAGATGTATATACGTACAAATTGAAGTCGTGTCACACATCTCAAAACAAAACAGATCAGTAAAATCCATGTTTCCGACATTTACCATTGAACCACACCAGTTGGAGCACCTGAAACGAAGAAAACCAACAGGAAAAATCAGCACGATATATGTCACACCTCGCCACCTCCCTCATACTCTTGCCTCGATTTTGAAGGAATCGACGACTGTATGTAGCCTATCCTTGATTTTCTCCCATCTCCTTTCATTTGCTCCAGTTGTCAACGTGTAAAATTTGCCATTTGCAATGGCAATTGCACCAAGCGCATGCCTGGTGAAATTTGGAGCTTGAGCTGTGAACTCAAAAGTGTAGTAAGTTCTTCCGTCAACGTCATTCTCTTTTGCTTCAATTAACTTTGTCTTTTGCGTAGGTGCGGCAAGAACCTTTCGTATAAGAGCTTCAGCAACCTAAATACAAATCATGGTGGATAAGATTTTGCACCTTCTCACCATACAACTGCAGAGACATGACCAAATGTTTGACGAAAAGAAGAAAAAAAAATAAACCTGATCTGGAGGACCAAGTTCACGGATGTCTTGCTTGCTGGTTGGAATTGTGTTGACGCTCACACTTTCCAAAGGCTCTATGACATCTTTGTAAACCTTATCTTGCCCTTGAACAACCACTTCCTGCCATCCAAATGGGTAGAGGAAGGAGTATCCATCCTTCTTGTCGGTTACAGGTAAGAACCCTTTCTTAGCCTCTGCTGCGTCTATACCACATCAGAATGGCACTCAGGCACATGGTATTGACCAAACAAACCATTCACAAGTCTGAGTGCTACTACAGTCAAGTATTATCACACTTGTACCACTCTACACTAATATATTAATATGGAAGGACAACTCACTTGCTGCCAGATTAGGCCAAGAAAGAAACACAGCAGCCCCTGCAGCTAGCAACATCCTCCGCCTAGAGCTCTCTAGTTCTCTCTTGATGCTTTGCCTTCCTCTCCATAGTAGCAAGAATCTCCATGCACCTGGTAGCAAGATCATTCTTGGCAAAAACATGCACTAAAGCCACAAAGTTTCCGTGTAAAGGGTGCACCCCAGAACTTAACTCCCTTCTAAGAGATTGCATCTGTATTAAATAAATATATCATTAACATTTTATAAACCCTGTGAATGTATCTCATAGAATAAATATCTTTACATTTATTTATCAACTATACCGATTATCCATGAGAGCAAGAAAGTTCTGCAGAAATAGTAATTAAGC

Coding Potentia
Explanation CPC Score
noncoding -1.19631
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0073300.1 10 16985840 G T
Osa10LNT0073300.1 10 16986332 C T
Osa10LNT0073300.1 10 16986613 A G
Osa10LNT0073300.1 10 16987389 G A
Osa10LNT0073300.1 10 16987792 A G
Osa10LNT0073300.1 10 16988119 C G
Osa10LNT0073300.1 10 16987839 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0073300.1 osa-miR6256 Translation 5.0 19.596 1 22
Osa10LNT0073300.1 osa-miR169e Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169f.1 Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169g Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169h Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169i-5p.1 Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169j Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169k Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169l Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169m Cleavage 5.0 17.778 1 21
Osa10LNT0073300.1 osa-miR169n Cleavage 4.5 17.778 1 21
Osa10LNT0073300.1 osa-miR169o Cleavage 4.5 17.778 1 21
Osa10LNT0073300.1 osa-miR169r-5p Cleavage 4.5 17.778 1 21
Osa10LNT0073300.1 osa-miR444d.3 Translation 3.0 15.431 1 21
Osa10LNT0073300.1 osa-miR5485 Translation 4.5 11.112 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0073300.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0073300.1 10 qLSVB10-1 Morphological trait Panicle/flower RM258 C677
Osa10LNT0073300.1 10 qLVB10-1 Morphological trait Panicle/flower C677 RM258
Osa10LNT0073300.1 10 nan Resistance or Tolerance Drought tolerance RM596 RM271
Osa10LNT0073300.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0073300.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus