>Osa10LNT0073400.1

TGTGGAAAATAATCATAAATCTCTGCATTCATTTTCTTCCTTCTCCCAATTAATACTTCACTTCTTTCTTTCTTTATAACATATCACACACACGACACATGGCCATGCCACACAACACAACTCCAGATAAATGACATGACACACAATCAAACCGACCAACTGAAAGGAAAACTCATCATCAGAAGTTCAGAATAGCAAACACACATTCAGACACACAAATTAAGGTAGAGAGGAGAGAGGAAGAGAACAAAAAAGATTATATACCCCCCTTTCAATTAACTTCAACCACAGCCAAGAATCAGACTTGCCTACCACTAGGCACACAAGCAAAATCCATCAAGTGATCACCTCGCTCCTCTTCAGCCTACCTCCGCTTCCGCCTCCGCCTCCACCTCCACCTCCACTGGAGCAATCCTTCTTCCACCTCAGCCTCCCGCACCTCGGTGGTCGCCGAAGGCGATCGCCGCGCCGCGCCACCATCAAGGGGAAGTCTCTGAGCTGCCACAGCTAGGGATGATTTGGGAGATGATAGCTAGGCAGGGACAGAGGAGAAATGGAAGAGAAGATGAGGGCAGTCCAGCCTAGTCTCTAGTCTCTCTACTTGACAAGTGACAGGCACTTGCCACTTCTCATTGGCAGAAAAGCAATCGGGGGGTGGAGGGGAATAAGGGCAGCGAATGAGGGGTACACCTCAGGTTTGGGAATTAAACTAATGGCAATGATTAGGGGCGTGGTGAGGGAGAGAAAAGCTCTCTTGGAATCTGCATCAGTGGACTAAACTACATGAGTTGGGATCTTGAGAAATCCTCACTTTTGTATCAC

Explanation	CPC Score
noncoding	-1.09349

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0073400.1	10	17089558	A	C
Osa10LNT0073400.1	10	17089934	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0073400.1	osa-miR5834	Cleavage	5.0	7.075	1	21
Osa10LNT0073400.1	osa-miR2864.1	Cleavage	4.0	22.835	1	21
Osa10LNT0073400.1	osa-miR2863b	Cleavage	5.0	8.655	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0073400.1	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583
Osa10LNT0073400.1	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0073400.1	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386
Osa10LNT0073400.1	10	qLSVB10-1	Morphological trait	Panicle/flower	RM258	C677
Osa10LNT0073400.1	10	qLVB10-1	Morphological trait	Panicle/flower	C677	RM258
Osa10LNT0073400.1	10	nan	Resistance or Tolerance	Drought tolerance	RM596	RM271

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus