© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa10LNT0074200.1
GTAGTACTTCCTCCGTTTCATATTATAAGACTTTTTAGCATTGCCCATATTTATATATATGTTAATGAATATATATATATATATATATGTGTGCGCGCGCGCGCGCCTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGTTTTATAAACTGAAACGGAGGTAGTAGATTATAAGATAGGGTCACATTTCATTAGCAACAATGGGGTACAGTCTTGGTTAACCGGCTCACCCACTCGTCAGGATGCCTCTTCCAGGACACTATCTACAACTTCCAGAATTTATCTGCTGATTAGCTGAGAAGCTGCATGTTTCATGCTACTAAATAACAATCTTATACTCCAGCTACTAGCTGCTTAAAATAACTTCAGCATCTTCTTTAAGGATCTCACACTCAACTAACTTCTGGTGGAGCATCTGTGCCTCTTTATTCCAGCCTGATTTGGCAACTTTTGTGACTATGGATGAACACAATGAATTCCCGGGGATACTATTTTTTGATAACATTACTTTAGTTATTTCAGCAGCAGCTTCCACTTTACCATCTCTACATAATGCCTGGATCACCATGACAAAGGTAGTTGTTTTAACTTCAAAGCCTAGAGTGAGCATCTGATTTAAAAGGTCCAGGGCCTCATCAGCCATGTCTTTCTTACAAAAACCCATGACAAGTGAACCATATGTGATGTCATCGGGGCTGATCCCGTCACTAAGCATCTCATCAAACAGAACCATAGCTTTCTTAACTTCAGCCTTCTTTGCTAAAGCATCTATGAGGGTATTGTATGTGATGAGAACCAACTTGTATCCGTTTTCTCTGATGCAGCGAGCAATCCCAAGAGCTTCCTCAACCATACCCTTTTTGGAGATGGCATTCAGGAGTGTGTTGCAGGTCACAATATCAGGAGAACAATTGTTGATAACCATCCTCTCCAACACATCAATTGCCTGATCCAGATGCCCATACTTACAAAAGTAATTGATAAAAATATTGTAGGTTGTAACATCAGGATCACGATTCACCTGGTTCATGTCTTCAAGCAAATCGCATACTTCATCCCACCTTCTCATGTTGCAGAGGGCATGGAGTAAGATGCAGTAGGTTGTACCATTTGGTTCAAGCCCTTCAGCAGCAAGACGAGTTAAGATGAACTTTGCATCATTCAGCCTGCCAGCCTTGCATGATGCACTGATGAGAGCATTATAGGTGACGACATCTGGTTGACATCCTTCCAAAGAAAGTTCATCCAAGACTTCCAAGGCCTTCTGAGGGCCACAATTCTTGCAAACAAGATCAACAAGCAAGGTGCTTGTCATCTCATATGGTGGCCAACCTAACCTCAACTGTTCTTTCCAAAAGGAGATCGCCCTGTCATACATACGCTGATTGAACATGCACCTAATCAAAGTGTTAAAAGTGATGCCGCTCGGAGAGCAACCACTGAATCTCATGTCTTCCAGAACCTGCAGTGCTGAGCTCAGCTGCCCACCACGGCAAAGCTGCGCGATCAACATGTTGCAGCTGATGGTGTCCGGAACCCCACCCGAAAGCACCATAACCTCAAGAACATGCCTAGCTTTGTTTGCCTTGCCGGTTTTAACGAGCCCGCGGATTATCCTAACGCAGCACTTAGTCTCCGGAATCTGGCCATGGAGCACCATCTCATCAATCACACAGCAGGCCTGGATGAGCTTCCCGCTGTTACAGTACCTGCGAAGGTTGTCAGCATAGCACTTTCCTCCATGTTTTGAGAAACCTGCCACATCCATTCCCTCGGGGTTCTGGTCCAATGGCTTCCTCGGCTTAGCATGGATGGGTGATACATCCTTCTCAGAATCTGCGGCCGCCCTCCCAAAATCATCCTGCGGCCGTCGGTCTCGGTCTGGCTGCACAACTACAAGACTACCACCACCACCCTCACCCTTGAAGAAATCATCCCTAGGCCGTCGTCGGTCAGGCCGCATCACCACCAAATTACCCCCATTCTTCTGCTCGGTTCTGGTAGGATAATCCAGATACACGGCGTGCGCTGTAACCCGCGAAGACCGCATCGTAATCGAGGCGCTTACGGTGATCGGCGCAGAGCCATTCGACCACAGGCCACACCGGTGGCAGCGGCTGACGTCACCCGAACGCGCCATGTTCATCGAACCACCACCACCACCACCATTGACAGCACAATCTAACCACCCCCACTGCAGAAATTCCCCGCAGATAAAAAAAATCGCCTCACCTTCCTCCAAATTGCAGAGCCCTAAATTCCCAAATTCCCAACAACCCCGGTTCTTGACAGGATTCCACCACCACCCCCTGCGGAATGGAGGAGGACGCGGCCCTCTCCGCCACCGCTTCTCCCCCTAGCGGCGGCGAGGCGCGGCGAGGCGGAGGCTAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGAGAGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa10LNT0074200.1 | 10 | 17774503 | A | G |
| Osa10LNT0074200.1 | 10 | 17775633 | T | C |
| Osa10LNT0074200.1 | 10 | 17776286 | A | G |
| Osa10LNT0074200.1 | 10 | 17776712 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa10LNT0074200.1 | osa-miR5539a | Cleavage | 4.0 | 20.436 | 1 | 22 |
| Osa10LNT0074200.1 | osa-miR5544 | Translation | 4.5 | 20.386 | 1 | 22 |
| Osa10LNT0074200.1 | osa-miR5813 | Cleavage | 4.5 | 13.308 | 1 | 22 |
| Osa10LNT0074200.1 | osa-miR5539b | Cleavage | 4.0 | 20.436 | 1 | 22 |
| Osa10LNT0074200.1 | osa-miR396c-3p | Cleavage | 4.5 | 14.503 | 1 | 21 |
| Osa10LNT0074200.1 | osa-miR160e-3p | Cleavage | 5.0 | 18.777 | 1 | 21 |
| Osa10LNT0074200.1 | osa-miR528-5p | Cleavage | 3.5 | 20.883 | 1 | 21 |
| Osa10LNT0074200.1 | osa-miR1436 | Cleavage | 4.5 | 3.824 | 1 | 21 |
| Osa10LNT0074200.1 | osa-miR1439 | Cleavage | 4.5 | 3.824 | 1 | 21 |
| Osa10LNT0074200.1 | osa-miR1850.1 | Cleavage | 5.0 | 12.166 | 1 | 21 |
| Osa10LNT0074200.1 | osa-miR1863b.2 | Cleavage | 5.0 | 16.595 | 1 | 23 |
| Osa10LNT0074200.1 | osa-miR5152-5p | Cleavage | 4.5 | 13.845 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa10LNT0074200.1 | 10 | ssd10 | Morphological trait | Panicle/flower | RG257 | RZ583 |
| Osa10LNT0074200.1 | 10 | nan | Physiological trait | Sterility | C701 | C16 |
| Osa10LNT0074200.1 | 10 | nan | Resistance or Tolerance | Drought tolerance | RZ892 | BCD386 |
| Osa10LNT0074200.1 | 10 | qLSVB10-1 | Morphological trait | Panicle/flower | RM258 | C677 |
| Osa10LNT0074200.1 | 10 | qLVB10-1 | Morphological trait | Panicle/flower | C677 | RM258 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa10LNT0074200.1 | osa-MIR11336 | 79.07 | 172 | 1 | 154 | 1.95e-22 | 102 |
| Osa10LNT0074200.1 | osa-MIR11339 | 81.395 | 172 | 1 | 154 | 4.16e-29 | 124 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)