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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0074400.1

GCAAGAACAGTGCACTTATATAGTTGATGGGCTCTCATATTCCATAGCAGAATAGGCTCAAGTTATCGACCATGGCCCTCATGAAGACAGGTTTATCAAGATTGCAATGCCAAGGGGTGATCCAACACAATTACACAAGTTGCTATCGATAGTACGACGCCAATATGCAAAGCAAAACAGATGAAGCTGTAGTCACAATCAATTCCTGGCATAAGATAGCCACCAATTAGTTTTACTTCACCTGGAAGTTATAAACAACAGATGGAATATACTGCCCAAGAAACTGAGAAAAATTGGCTAGCCCAGTGTAGCCCAGGGATACAGCAAGTATTGATCCAAGTACCAAACCCAAACTACGGAGTACTCGTTTTGCCATGTGTATGCCACGACCTTCAACCTCACCATACTCATTGTATATAGGAGTGCTAGCTGACTCGGTAGCCTTCAGTTTGTCAAGTATTCGATAGAAATAGGCAAAACACAAAAACTGCATGGGCTTCCAGTCTGCATGGCCCATGGTAGATATATACATGATAAATGTTGCTGATATTGCCATATTAATGCGCAGGTCCTTCCCAGTGGATCTTGAGTATCTAGGCCCCCAAGGAACCACTGGTTGATTATCAGCATATTTAATGTCCTTTGACACCTGGATTGATCCATATGCCACCCCATTCTTCCGGTTCTGAAGCTGCTCCATCATGACCATATCGTATGCCCTCTCTAACTTGAACAGGTGCTCGGCATCTTTGTTGCTCTCGGCATCCTTTCGCCTCCGCTTATAGGCCATCTTCACCTGGTCGAACCCATCAAGTGGACTGATCCCCAAAATCTCGTATGGATTCTCACTGTCCCCGGCGCCAAACTGCGCGCTCCCCGCCGCCGCCGATGCAGCCGCAACAACACCACCTCCACCGCGCTTCGCCGGCACCGCAGATAACCTAGCGGGGCGCGCGACGACAATGGGGGCAACCCAATGAGGCAGGAAGACGTGGCGAGGGGAGGAGGAGGAGAGACTCCGGCGGAGGAAGAGGCTCGCAGCCGCCGTAGCGGATGCGGGCGCCGCCGTCGACATTGGGGAGAAGGTGAGGGGGCGCCGGTGGTGGGGGGGTAACGGCTAGCGGCGGAGGCGACGAGGCGAAGGCGGTGGCGGTGGTGGCGTTGCCAT

Coding Potentia
Explanation CPC Score
noncoding -1.23914
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0074400.1 10 17906396 T C
Osa10LNT0074400.1 10 17909137 A T
Osa10LNT0074400.1 10 17906318 T C
Osa10LNT0074400.1 10 17906766 A G
Osa10LNT0074400.1 10 17910206 C T
Osa10LNT0074400.1 10 17907648 A T
Osa10LNT0074400.1 10 17910523 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0074400.1 osa-miR167c-3p Translation 3.5 10.737 1 23
Osa10LNT0074400.1 osa-miR1861f Translation 5.0 14.911 1 22
Osa10LNT0074400.1 osa-miR1861l Translation 5.0 14.911 1 22
Osa10LNT0074400.1 osa-miR1846e Translation 4.5 15.399 1 20
Osa10LNT0074400.1 osa-miR2095-3p Cleavage 5.0 14.73 1 20
Osa10LNT0074400.1 osa-miR2864.2 Translation 4.0 16.304 1 21
Osa10LNT0074400.1 osa-miR5506 Cleavage 5.0 12.32 1 21
Osa10LNT0074400.1 osa-miR1861b Translation 5.0 14.911 1 22
Osa10LNT0074400.1 osa-miR1861i Translation 5.0 14.911 1 22
Osa10LNT0074400.1 osa-miR1861n Translation 4.5 14.911 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0074400.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0074400.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0074400.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0074400.1 10 qLSVB10-1 Morphological trait Panicle/flower RM258 C677
Osa10LNT0074400.1 10 qLVB10-1 Morphological trait Panicle/flower C677 RM258
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus