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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0074500.1

CATCCATGCATAAAAGTGGTTCAGAACATAACATTACTCTCCAGTTCTACATAGATAGATAGCATGGCATATCTTACATTTTTCTCAGCGTCCATTGCTCAGGTCATCTTAACTACCATAAGAATACCATTGATCAGACAAGTTCTTTGTGATGCTACCATAATTTTATCATAGATAGTTTGGCAGGTGTTCTTGCCAGAAGGATGCAAGGGCATTGTTTCTTCCTCAGACCACAATCTGACTCTCACTGGATGACCCGATGATGGTGATGTCTGCCTTGACAATGCAGCTTGATCCGACAAGATCCTTGAGTTTGTTGAGCGCGATGAAGTTGGACCATCCCCAGCCATTCTTACTAGCAAAGACAAAGCGACCTGAAACTTTGTGAAGTTGCGCATTGTTTTGGTTCAGGATGGATAGTGTCAGTTCGATCATCATCCCAGGCTCTGGAAGGAGCTTGTCCCAGGATTGCGGGAACAAGTACATGGAAAGGGAATTAGTGCTGTACTCATCACCACGCGGATACATTCTGATGAACCATTTGCGTCTGCCAATTTCAAATGCAGGTGAAAGGACCGATGGCTTCAAATCCAACTCAGGGAAGTTGTTCATGGTCCAGGTGTAATCCCCTTTAGTGAAATCCTTCTTCTGGAGGAAGAGATTCTGAACAGAGACAAACTTCTTCTTCTGGAGGAAGAGAACCTCTGAACTTTAACATTCTTCTTTTTAAGAGAACGGCACACATCTATTTGTAATATCTCCACACCAAGGACACAAGTATCATCAAGCAGATACTCAGATGATTTCAGTTGGTCTTCAAGGGAAATCAAGCATATATTCCTTGAGTGTGTGTTCTTGACGTCGAAGTTGTAGCTAGCTTTGACTACAAGAAAATTTCCCTTCGAATGGTTGTACATTGACAGCACGAACACTGCATTCATGGTGTAATCTGGCTTAAAGCTTAGTCGGGACAGCACAAGAGAAAGAGCAACATGTGGAGTTCCATCACCAAGGGTTTTATGCATTGGAGACACTTTCAAGTACCAGTTGTATCCAGAGCAATGAAATGCAGCAGACTTGGCTGCTAAAGCTCCCCTCTGAAGTAGCGCTGAGAAGCCATAAACCTTCCATAAGAACACTGGATTATGGATCTTTACCAGCAGTGCATCGGGAGCACTAAGGCAGGAGTTGCCCATAGCTTTTTACCACTTCGTCTTCTTGGGAATAACCTCGCACTCGCAATCACAGCAGCGCCTCTTCCTCGC

Coding Potentia
Explanation CPC Score
noncoding -1.12279
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0074500.1 10 17955066 G T
Osa10LNT0074500.1 10 17950353 A G
Osa10LNT0074500.1 10 17950439 G A
Osa10LNT0074500.1 10 17950527 T G
Osa10LNT0074500.1 10 17950883 T C
Osa10LNT0074500.1 10 17951405 A G
Osa10LNT0074500.1 10 17951524 A T
Osa10LNT0074500.1 10 17951805 T G
Osa10LNT0074500.1 10 17952541 G A
Osa10LNT0074500.1 10 17953996 T C
Osa10LNT0074500.1 10 17954239 A G
Osa10LNT0074500.1 10 17954315 G A
Osa10LNT0074500.1 10 17954632 G T
Osa10LNT0074500.1 10 17954663 T C
Osa10LNT0074500.1 10 17954800 A G
Osa10LNT0074500.1 10 17955028 T G
Osa10LNT0074500.1 10 17955279 A T
Osa10LNT0074500.1 10 17955666 T C
Osa10LNT0074500.1 10 17956317 T C
Osa10LNT0074500.1 10 17956809 T C
Osa10LNT0074500.1 10 17950882 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0074500.1 osa-miR1437b-5p Cleavage 4.0 24.528 1 21
Osa10LNT0074500.1 osa-miR166a-3p Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166b-3p Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166c-3p Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166d-3p Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166f Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166g-3p Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166h-3p Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166i-3p Cleavage 3.5 19.022 1 21
Osa10LNT0074500.1 osa-miR166m Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR166j-3p Cleavage 5.0 19.022 1 21
Osa10LNT0074500.1 osa-miR390-3p Cleavage 3.0 22.651 1 20
Osa10LNT0074500.1 osa-miR1861e Cleavage 4.5 23.841 1 22
Osa10LNT0074500.1 osa-miR1861g Cleavage 4.0 23.841 1 22
Osa10LNT0074500.1 osa-miR1861k Cleavage 4.5 23.841 1 22
Osa10LNT0074500.1 osa-miR1861m Cleavage 4.5 23.841 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0074500.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0074500.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0074500.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0074500.1 10 qLSVB10-1 Morphological trait Panicle/flower RM258 C677
Osa10LNT0074500.1 10 qLVB10-1 Morphological trait Panicle/flower C677 RM258
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa10LNT0074500.1 10 17956317 Blade-pubescence-at-vegetative 9.66160965 -