>Osa10LNT0074600.2

GGTCCCAGAAATCAACTGAATCACAAGCAATATTGAATAGGCATCATAACAAAGTTTCATCAAATTTGGTTGCATTTCACAAGCAGTACTTAATGGACCTGAACGACATTGTGTACTGAATTTTCTTGTGTAATTCACAAGAAATGTTATTTTATTGTAAGGCCAAAACACAGTAGCGACAATACTAAATCATGGTTCCTTCTCGGTTGCTTCATCGGAGACGTCGTCATTGCAGATCTTCATTGTTATCTCGATGGGAGAAGACCAGCGAGGATCATACCCTTCTCCCACCTTCCTTTTCTCATCGCGTCCTTCTTCTACCTTCTTGGACTTGAAGTCTTCCATGGAACTCTCAACATGCCGGCAGCCATCACGTATGTACTGAAACATCATCATGATGGCATTCGCGTGGCCCATGTAATAATTCCCCTTGTTTGGTGTTTGCCCTGACGAAGGCTGCACCTTCGCATCATCCTTGAAGTTCATTGACTCCTTAGGTGTGGCTTGATGTGGTGAAAAATCCACATCATACATGGATGCCATGCCTTACAAGATGATGAGTTGAAGTTGAGCAGTCGTATGCAGCCGGCTAAGGAGGATCAGTAATTTTTTTTGGATCACACTCCTTCACCCACATATATATATAGGCTAAGGAGGATAATGTTACCATTGTTGTTATCATGATATTTATGGTTTATGGAAAGACATAACAATATTGCCTTGTATGTCTTGTGAGTTGACATGTATGGGCATGTAATACATGGAAATATTGCCATAATAGCAGCTGACAGAGATTTGGATATGATTTGCTAACCTTTACTCTCATCTGCTGCAGGATAGCGTAATTGACAGAGATTTGGATATGATTTGCCAATAATATCCCAAGCTTGCTGCTACGACTGCCGCTCACAACCATCAACTTGAAATTCCAAACTCCTAAAAACCAAAATCTATAGAGTTCATTTTTTCGATTGCCAGGTTTCTGAAATTTTAATCTCTACTCCTGTAAGTCGGTACCAGTAACACCAAGTTGAAATCATGATTATCTTGAATAACTGGAGTGAAGTAGTCACCAGCAGAGCAGGAGTCCTCAAATATTAGATCCTTCAATCAGATTTTTTCTGATTCATGCAACACTATACCAAACAGAAATTTAGTAGAATCAGCCAAAAATTTCCTTGATTGTGCAGCAAACAATAGCAGTTGACATGGTGTCCTGTCAGCCTGAATTTTTCTTCGACAACCTGAATTTTTGTCCTTGTTCGCAGGCAGGATGACGGCTTGCAGGGTTGAGGAGCCCTGGATCAGTGGCGGCGCGAGGGACCGAAGCCGGTTCGCCTTCGAGGTCGGGACGGTGATGGAGCGACACAGCGACGGCGCCGACGGGGCTGCGGGCTGCGGCGACGTGGAGCGTCGTTGGAGGGCAGGCCCGACCTCGCCTCCTCCAGCCGTCGCGCGGAATCACGCCCCCATGGCGGAAATAGACGGTGATGCGGCTGCGGCGGCGTGGATCGGGGCTGGAGCGGCGACGTTGGAGTCCGGGGGCGTGGTGGAAGGGCGAGACAGTGCGGCGCAGCGCGGTGCGACGGTCGACGGGGGCTACGGGGAGACGCTGGCGAGGGCGAGCCGGTGGAGCGACGGCGGCGATGGGGATCGGTTGAGGCAAGCCGGCGGCGGGGATCGGTGGCGACGAGGAGCAGATCTGCACGGAAGGTCTCGGCAGCGACCACGCGAGGAAGGCATCGGCGGCGACGTGAATCGGTGGCGGCGAGACGACGGATGCGACGACGGCAGAGTGGCGGTAGTCGAGGGCGGCGGCGACGGCGGTGGCGCGGGGATCGGTGGCGGCGAGACGACGGATGCGACGACGGCGGAGCGGCGGCAGTCGAAGGCGGCGGCGACGACGGTGGTGCCGCGTGAGAGGAGAGATGAGGGCGTAGGTCGTGGT

Explanation	CPC Score
noncoding	-1.34114

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0074600.2	10	17960656	T	C
Osa10LNT0074600.2	10	17960818	A	C
Osa10LNT0074600.2	10	17962823	C	T
Osa10LNT0074600.2	10	17962868	A	T
Osa10LNT0074600.2	10	17964262	G	C
Osa10LNT0074600.2	10	17964436	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0074600.2	osa-miR5542	Cleavage	5.0	13.416	1	21
Osa10LNT0074600.2	osa-miR444b.2	Translation	5.0	9.895	1	21
Osa10LNT0074600.2	osa-miR444c.2	Translation	5.0	9.895	1	21
Osa10LNT0074600.2	osa-miR444f	Translation	4.5	9.895	1	21
Osa10LNT0074600.2	osa-miR2090	Translation	5.0	15.364	1	22
Osa10LNT0074600.2	osa-miR2093-5p	Cleavage	5.0	12.664	1	20
Osa10LNT0074600.2	osa-miR2118a	Cleavage	5.0	23.935	1	22
Osa10LNT0074600.2	osa-miR2118a	Cleavage	5.0	20.735	1	22
Osa10LNT0074600.2	osa-miR2867-3p	Cleavage	5.0	16.421	1	20
Osa10LNT0074600.2	osa-miR2920	Translation	5.0	18.371	1	23
Osa10LNT0074600.2	osa-miR2920	Translation	5.0	13.632	1	23
Osa10LNT0074600.2	osa-miR2930	Cleavage	4.0	23.793	1	22
Osa10LNT0074600.2	osa-miR5075	Cleavage	3.0	21.097	1	21
Osa10LNT0074600.2	osa-miR5337a	Translation	5.0	14.095	1	21
Osa10LNT0074600.2	osa-miR5542	Translation	4.5	15.688	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0074600.2	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583
Osa10LNT0074600.2	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0074600.2	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386
Osa10LNT0074600.2	10	qLSVB10-1	Morphological trait	Panicle/flower	RM258	C677
Osa10LNT0074600.2	10	qLVB10-1	Morphological trait	Panicle/flower	C677	RM258

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus