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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0074700.1

GAATATTTACACCGGTGTACGATTCGATATCGTGGTCATCACTCAACAACAAGAAGCTTTGGATTTGAGCTCGTCTCCCTCCAAGGGAGGAGAAACATGTGAACTACTAGCTACCACAAGGAGAGAATACAATCACCAACAACACAGAGTTTGTTTCGTGTCCTATGGCTATTTACACGCCTAGTTCTCACTATTATACACCAGGGTGGTATCCACTGGGCGCCATGCTGCCGTCCATCGGCAGCCTCGGCATGCTTCTCCTGGAGCCCCATTCCTGGCAGCACTCTAGAGCTAGCCGCAGGGCGGTGCCGAGGCCGAGAACTATAAGAACACCAATTATTATGTTCACAGGAAGTGCGGAGACGCCAAGAGAAACAGATATCAGAACATCCAACAAGAGTCCGCCAATAAGAATTGCAAATGCAACCCACAGAGGGCTAAACCATCCCTACGTACACAAAGAGAAAGACATCATATATGAAGCAGAACAGAGTGAATAATTTCAGCACAATTGAAGACAGTCACATGGTAGTTTAGTTAGTAACTTCTTTCTGCATCAGTGCAGTCAGATAGTTAATTCATATGCATCTGTTTCTTTTTTTTATCTGTCTCCAGTTACAAAAATACCCTTTCATGTCCTCCTCGGCCCCTTCCATAAGCTGAATCAACCCTCCAAACCCAATAACTTGTCTGCTCAATGAGAAAAAAGCAAATTTTTCACTACTAGCAAGAGAAATTCGGTTTATACTTTTTGCAACACAATATCCACTGAATTTCAGGAGGCATTTAATTGTCTAGCAGTGGAACATAAATATTTGAAAAGCTCAATCAATTGAAAATGATACATATAGGGAAGTGTTCAAAACTACAAACACATAAAAGCAAAAGGATGTGATTTAGCTGGTCTCAACATAGATAGAGCTCAGTCGTTTTTTTTTACTTGAGGATATAACTAATAATGGCTAAACATAGGATGGGAAGTAATGTTTTCCAAAATAAACCTTGAAAACAATATTAGACAGGGTGAGAAATGGTATACATACACTAGCTTGCGTCTCTGGAGGGGGAATATTGACAGCAACCTGCTGGCAGATTTCACACTTGTTTGAACCTCTAGTACGAAACCAAACACTAATACACGTGCGGTGAGCCTTTGAAAGATCACCTCGACATCTGCACCCAAGGTCTACCAAAGGTTCTTCTGTCTTCTGTTGACATACCCTGCATTGCTCGTCGAAGCTGTCCGTCCTCGCCAGCTCCGCCTCCTTCACCGCGGCCGCCGCGACCTTCGCCCCGGCCACCACGGGGGGCGGGGACGCCGCCGCGGCGCCCTTCGGCTCGGCCGCCTCCTCCGGCTGCGAGATCACGATGGTCACCGCCCCCGCCCCCGCCCCCGCCCCCGCCTCCGCCGCGGCGGCCGCGGCAGCCACCACCACCACCTCTCCGCCTGCGGCCCGGGCTGTTCACCGCCCACGTCCGCCGAGCCCGGTCCCGGTCCCGGCTCCGATCCGGCGGCGGCGGCGGTGGTGGCGGTCGACATGTTGACTACCTTGGCCCCGGCCGCTTCTGGGGCGGCGTTGCGTCGAACACCTCGCGTGCGAGGGAGGTGGATGGGGATGCGTGGAGATGTGCGGGGTGGGGCACCTACTCCCTCCCTCCCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.799695
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0074700.1 10 18154009 T A
Osa10LNT0074700.1 10 18154114 T C
Osa10LNT0074700.1 10 18154667 G T
Osa10LNT0074700.1 10 18155956 A G
Osa10LNT0074700.1 10 18154222 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0074700.1 osa-miR5539a Cleavage 4.5 16.239 1 22
Osa10LNT0074700.1 osa-miR171d-3p Translation 4.0 11.816 1 21
Osa10LNT0074700.1 osa-miR171e-3p Translation 4.0 11.816 1 21
Osa10LNT0074700.1 osa-miR2098-5p Cleavage 4.5 22.175 1 20
Osa10LNT0074700.1 osa-miR5337a Translation 5.0 10.916 1 21
Osa10LNT0074700.1 osa-miR171b Translation 4.0 11.816 1 21
Osa10LNT0074700.1 osa-miR171c-3p Translation 4.0 11.816 1 21
Osa10LNT0074700.1 osa-miR171f-3p Translation 4.0 11.816 1 21
Osa10LNT0074700.1 osa-miR5539b Cleavage 4.5 16.239 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0074700.1 10 qLVB10-1 Morphological trait Panicle/flower C677 RM258
Osa10LNT0074700.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0074700.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0074700.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0074700.1 10 qLSVB10-1 Morphological trait Panicle/flower RM258 C677
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus