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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0074900.1

GTGCTATATATATTTTTTTTTCAGATTTTTAAGAACTGTTTGGATTGCATAAAAAATGAAGGCAACCCATTTGGGCTTAAACACTTACCAGGACAGTCATCTTCTGACTTAAATGTTTACTTATACTACGGTTGATTAAAACAAACTTCTACCCTGCAACTTGAATGCTTGATGGTTCCCCAAAAATTAAAGCAAAATAACATTTGGAACGCAGATACTATGGCTGTGATCAAGGAGAGGTGGCTGATGCAGTCTGACCTGCTTCTCCATCATCAGTAGGCCTCAATAACCTTGCATCATGACTGACTGCTAGCTTCCTCATCTTCTCGGCAGCAGCGTTTAGGGTGTCATTGCTCTTGCAAAACGCAAACCTGACATACCGGTGATGGTAGCTTGGGTCGTCGGTACTTGAGTGGAAGAATCCCCGACCAGGCACGGCCGCCACACCAGCATTTTTTATCAAGTTCGTCACGAAATCCATATCTGAAAGTTGCCATGACCTTGGAAGCTCAACAAATACAAAGATCGAGCCTTGTGGCTTGAAGCTAATGCGGAAGCCAAAATCAGTAAGCACCTGAAGGATGAAGTCTCTTCTCGCCGTGTAGTCCTGTTTCAAGGATGAATAGAAGTCTGGTGGGCTTGTTAACGCAACCAACGCAGCTTCTTGGAATGGTGCAGGGGCTGAATCAGTTAGCTTGACATGGATGTTTCTTATTGCTGAGGCGATATTAGCTGGAGCACAAGCCCATCCAATTCTCCAACCAGTTACGCTGTAAGTTTTTGACAGTGAGGAAGTAATGATGGTCCTTTCTTGCATTCCTGGAAGCGAAGCCAATGAGATATGCTTGTTCTCATCGTAAGTAATGTACTCATAAACCTCATCAGTTATTGCAAAGCAGTCCATTTTCTGACAAGCTTGAGCAATGATAAGCAATTCCTCTCTGCTAAAAACCTTTCCTGTTGGATTGTGCGGGCGAGACACATTCCATCGTTACATTCATAAAAGCTTATTCTCCTCGAATACTGATGGGAATCAATCACCTATTCAAGACCACTGCCTTTGTCCGGTTTGTAAATGATTTCAAAAATTTATCTTCATTCAAAGTCCAAGAAGGTGGATCCAACGGCACATACACAGGGACACCTCGGGCTAGTTCAATGCACGTTTGATAGGTTTCAAAAGCTGGATCAAAGAGCAAAACTTCATCCCCTTGGTCAATTATTGCAAATATCGCTGCAGCAAACGCCTCAGACTGGCCGCAGCAAACGGCGAAGTCGGTGAGAGGGTCGACGCGGAGGCCATGGTCCCGCTTCATCGTCTCCGCGAGGGCGTCGCAGATCCCCTGCACATGCCTGTACTGGTTGAGGTCGGCGGCGATGGCGGCGGCGGCGGCGGCCTTGACGTGGGCGGGGGCCGGGAAGTCGGGGAAGCCCTCGGCGAGGTTGACGGCGCCGGCGCGCTGCGCCAGGTGGGAGAGCTGCTGGATGGGCGACGGCGCCACCCGCCTCGACGCCGCCGACAGCTTCGCCTCCATTGCGCTTGCTCGCAGCGCTCGCGTCTCCGGCGTTCTGGATAAGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.78003
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0074900.1 10 18313404 A G
Osa10LNT0074900.1 10 18311882 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0074900.1 osa-miR5831 Translation 5.0 7.787 1 24
Osa10LNT0074900.1 osa-miR418 Cleavage 4.0 16.546 1 21
Osa10LNT0074900.1 osa-miR810a Cleavage 4.5 21.196 1 21
Osa10LNT0074900.1 osa-miR5500 Cleavage 4.5 16.135 1 22
Osa10LNT0074900.1 osa-miR5508 Translation 4.5 15.411 1 21
Osa10LNT0074900.1 osa-miR2923 Cleavage 4.0 10.829 1 21
Osa10LNT0074900.1 osa-miR5492 Cleavage 4.5 10.829 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0074900.1 10 qLSVB10-1 Morphological trait Panicle/flower RM258 C677
Osa10LNT0074900.1 10 qLVB10-1 Morphological trait Panicle/flower C677 RM258
Osa10LNT0074900.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0074900.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0074900.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus