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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0075000.2

ACTGCAATCTGGATGCACGGCTCATAGAATTGAATGGCCAAAAAACTCACAGAACATGGATGCTTCAAAATTTCCAGTTAATTTGACGCCCTCATTGTTACAAGTGTAAACAGAATCTGAACTACTGTTAACAATAATGTTGAGTAGCGAATTACAGGTGGGCATTTCTAAAAGCTATCTCCGCCTTGGCGGATCAGAGGACCTACGCTGCTTTCCATCTGTATCTGATCTCTCCTTCATATCTGACTGTTTAAGTTTTGTCTTCATGTCGTCCGCATAGCGCCGCCAAATAGACTCCCGGTCTTTACTTGCCAGTTTGTTGTACCTAGGATCAGATCTTAGAAGACCTTTTGCTTCGGTCCAGGAGTTAATTGCAGTCTTTCCTTCATCTGTTGTTCGAGCAGCTATCTCTGGAGTTATCACCTCAGATAGGAGCGCACGGAAATCCCGAACACATCGCTCATACAGGTCCTTGACATGGTCACGAAATAACTTTTCTGCATCACCTTTACCTAAATCAGGATTTACTGCACGGCCTTGTGGATCCTTTTCAAGTCTTGGTTTGGATTCTGTCCATGATGCCTTGGGATCTTTTATGATTTCAACAAGTAAAGCTTGATATGAAGACACGGCCTCTTTTCTTCGGATCTTCAATTTTACTCTCTCCATTTCCTGTTCTTCCCTTTCTTTCCTTTTCCGCATCTCGCGCTCCCTCTCCTTTAACTTGGCTTGTTCATCCAGTTTGGCCTTGGCAGCTTGCTCTGCTTCCTTTTCAGCGGATTTTAGTTCTGCTATGTACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGCTTTGTACCTTGCATCGCTCCGGAAATTTTCTTTCACTTTGGTCCAACGGCTAGTAGAGGTTATGTCTTTACTTTCTCGAAGCATTGATTTGAACTCAGCTATCACAGCATTGCGCACTGATTGAACTTTCTCTTCAATCGATTTCACCTTCTCGTTGAAAAGAGCATCCCTTTCTTTTCGGTCCAAGGCTTCAAACCTTGGATCAGTGCCCCATTTTCTTTTGAATTCCTTGTAATCCTTATTGGAGTTGATGTCCTCGGATGCTTCTTCTAGTAACTGTTTATACGCCTCCACTGCAGCTCTCTGAGCAGCTCTTTTCTCTTTCCGCTCCTCGTCAGCACGTGTCCGAACATACTGCTCAAATGTAGACCGTCTCCTCGAGTGACTTGGAATAGCCTTAAAACGTGGATCAAACACTATTTTTGGGAGTTCCTTTTCCCACTTTGAAAATGGCAATACACCTCTTTCCTTTAACATCTCCTTAAACTGACGAGTACACTCCTCTTCACTTGGGCCATGTTCCTCATCATCTGAATTTGAAGAGGAATCTGACATATTACCATCACCACTGTTATCTTTTGATTTCTCGCCGCTAATTGAGACTTGATGTCCCATAGGTGCAGCATCAGTTGTTTTAGACCCATTCAGCTCGGATGCACTAGATGGAGTAGCAAGAGGTGAAGGCACACTGGAAGCGCCAGCATCCTGTCTGTACAGCAGGAGTATCAATATCAATACTTATTTCCTCTTTATTCCCTATCGTGCCAGCATCTTGCAGCGAAGTTGAACTTCCTTTCAATGGACCAGACTCGGCATTCTTGATGAGCTCAGCCACCTCTGGTGGAAGCTGCCAGCTGCTAACCTTTAGCTTATTATCATAGTAATATTTCTTTCCATCACTTGTCGTTACTATGCTCCAGTCAGTGCCAGCCAGTTTGTCCCAAGAAACTGGAACTGGCTGGGCTGCGACCTTCTCAGGCTCCCCTTTATAACCAGGTGGTTTTTGATAAGTTGATTCTCCAGTCAAGGCATTGTAATAATATACAACACCAGCCTCTGTCTTGTGTGCAGACCATGAATCTGAATCCTGAATGGCAGTAGTTCTTTTGTCCTCGAGCTGATCGCTGTTTTGGCTTCCCTGTTGAGTGGGCTGCTCAGATCCAGGATTTGCTGATGATAGCTCCTTGGAATCCCTGTCAGTTGTTGAGACACCGGGTGGTTGTATGCTTGGCAAGTATGCAGTCACAGAAGAACTCCCAACCATCGGCCTACCAAGAGGCCCTAGAAGACCAGATGGGTATGATTGGAAGGGGGGTTGCTGAAAACCAGTAGGCTGTGGGGGATATCCCCATAGAGGCTGAGGTTGAACCCCATGTGCTGAAGGATAGGAGGGGTACAACTGTTGCTGACCAGGCTGTTGAAAAGCAGTTGGAGACTGCGATGTTTGGGGAAAAGGAGAAGCAGATGGAGTCATAGGTCTCCCAAGGAGGCTTGGTGGAGCAGACAAGATTGTGGAAGGTTGTCCAGGTACAGAAGCACCAATGGCCCCAAAAACCTCCGGGCGAGTTGGAAGTGATGGATTTGTTGGCATCTGAACAGTGATTGAAGGACTTCCAGCAGTACTTGTTGATGGTGGGCCTGTCGACAACTGCATGGTCTGGGGACTAGCCTCTGGGACACTTCGAGTATCAGACCTGGAAGTGCTAACATCTGAGCTCCCACTGTTTGAAGGTAACTGAGATGCCTGGGGCTGTGCCTGTTGTGGGCTTGCAACAAAAGTATTGATGGATGGTCTGGGTGGACCTGGAAATGGCAAGCGAATAGATCCAGGAGGATTTGGTGGCATAGCTCCTGCTCCTGGAAATGCTGAACTTGGGCGAGCTAAATTCATAGGAGCTGGAGGTTGCAAGGATGATGGTGGAACAAACCGTGAAACTTGGACAGCATGGTTTGTGCCCAGTAGGCAAGCCAGCATTAGCATGCGAGACTACATTATATGAAAAAGACGGCCTGTTCCCAAAATATTGCCCTGGGACAGGAGGCTGAAGAGCTGCAGCAGCCACTGAAGGAGCCATCATGGCCGGAGGGGAAGCTAGCTGCTGCTGGGCCGCACCACTGCCCACCTGCGGCCGGGGTGACGGCCTCGGAAGAACGTTGTACGAGAACGCCGGCGCCGGGGGGCTCGCGTAAGCGGGCGACCCGGCGAACTGCGGCCGCGGGGGCCCTGGAGTTGCAGGAGACGCCGGATTCGCCGGCATAGACGGCGCCGCAGGACCGGAGCCGGAGGTAGGAGCGGGAGCGGCCGGGGCGTCTCCCTCCACCGCACTATCCACCACCGCCGGTGTCGTTGCCGCCGCGACGACGCCGGAATCGAACGGTCCTTCCGATTCCGACGCCGGGGCAGCGGACGGCACTTCCGCCGCCTCCGGGTTGGTCGCGTCGGAGGCGGCCGTCGCCGGCGTCGCCATGGGAGAGGAGGAGTCGGGGGGCAAGGCCTAGGGTTTTTGCGGCCTAGGCGAGCGGAGCCGGATGTTGCGAGAGGGGAGC

Coding Potentia
Explanation CPC Score
noncoding -1.16453
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0075000.2 10 18323227 A G
Osa10LNT0075000.2 10 18330789 G A
Osa10LNT0075000.2 10 18323126 G A
Osa10LNT0075000.2 10 18323409 C T
Osa10LNT0075000.2 10 18322338 T C
Osa10LNT0075000.2 10 18322425 C G
Osa10LNT0075000.2 10 18322645 C T
Osa10LNT0075000.2 10 18322762 T C
Osa10LNT0075000.2 10 18322956 T G
Osa10LNT0075000.2 10 18325172 G A
Osa10LNT0075000.2 10 18325176 A G
Osa10LNT0075000.2 10 18325279 T G
Osa10LNT0075000.2 10 18325426 T A
Osa10LNT0075000.2 10 18325556 A G
Osa10LNT0075000.2 10 18327639 A G
Osa10LNT0075000.2 10 18327757 C T
Osa10LNT0075000.2 10 18327812 T C
Osa10LNT0075000.2 10 18327939 C T
Osa10LNT0075000.2 10 18327992 A G
Osa10LNT0075000.2 10 18328371 A T
Osa10LNT0075000.2 10 18329953 T G
Osa10LNT0075000.2 10 18330453 A G
Osa10LNT0075000.2 10 18328477 G A
Osa10LNT0075000.2 10 18327941 C G
Osa10LNT0075000.2 10 18328372 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0075000.2 osa-miR167d-3p Cleavage 4.0 24.438 1 22
Osa10LNT0075000.2 osa-miR529a Translation 4.5 21.87 1 20
Osa10LNT0075000.2 osa-miR1846e Cleavage 5.0 22.229 1 20
Osa10LNT0075000.2 osa-miR5076 Cleavage 2.5 17.292 1 22
Osa10LNT0075000.2 osa-miR2863c Cleavage 4.5 14.017 1 24
Osa10LNT0075000.2 osa-miR5504 Cleavage 4.0 14.961 1 21
Osa10LNT0075000.2 osa-miR5521 Cleavage 5.0 20.157 1 21
Osa10LNT0075000.2 osa-miR1425-3p Translation 3.5 20.054 1 21
Osa10LNT0075000.2 osa-miR2275d Cleavage 4.5 17.956 1 22
Osa10LNT0075000.2 osa-miR1865-3p Cleavage 5.0 18.163 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0075000.2 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0075000.2 10 nan Physiological trait Sterility C701 C16
Osa10LNT0075000.2 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0075000.2 10 qLSVB10-1 Morphological trait Panicle/flower RM258 C677
Osa10LNT0075000.2 10 qLVB10-1 Morphological trait Panicle/flower C677 RM258
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus