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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0075100.1

CTCGGCATGGGCGCATGGTTGACAGTAACTGCTAGATGGGGAACTGGGGACTCGAGGACTACATAGCTCATCTGATTTAAATGCCGCGACAGGATTGGGGAAGAAGAAGCAGGATAACCTTCTCGATCGCTACGGCCGCGGCGCGTAGTGACGCAGTCACGCAGAGACCGGAGCCGAACCTAGCCTGGGAGGGGCGCCGTCACTCCGGCCGCCGGAACCCGGAGACGGAGGCGAAGCTCGCCTCCGCTGGGGAGGAGCGCGGCGGAGCGGCGCGGTGGCCGGCGGCCGGCGGAGCGACAGCGGCGTGCCGGGGTCCTTCCTGGCCAGGGTCGACCGCGTGGCCGTCGCCGAGGTCGAGCTTGTCGCCTCTCCCTGGTCCGCCCCCGGGCTCGACGCCATCGTGCGTGGCGTGCCTGCCCAAGTCCCAGAGAGGAGAAGAGTTGATA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.955967
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0075100.1 10 18409629 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa10LNT0075100.1 DTM_#DNAt_MULE_japo_Os0037 Chr10 . 18408471 18410153 445
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0075100.1 osa-miR2101-3p Translation 5.0 19.596 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0075100.1 10 qLVB10-1 Morphological trait Panicle/flower C677 RM258
Osa10LNT0075100.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0075100.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0075100.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0075100.1 10 qLSVB10-1 Morphological trait Panicle/flower RM258 C677
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus