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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0075200.2

CGAAGAGAGAGAGAGAGAAAGAAACCATGGTCGTCGGAGCTGTCTCCTCACACAGTCTCACCATCACCACGCCACCGCCGCCGCATCGCGAGATGCTGCCCGTGGGGTGGTGGTGACGCGGGGGAGCTTGTGCCGGCGGCGGAGGCGCCGATCGACGGGCGCAGTTGCCGAATCCGTGGGGTTGGTGGGCGGTGTTGCTGTGAATTGTGAAAAAACTGACACATAGGCTTCTTATATCCGTCTGGACTCTGGAGATTGCGGTTGTTGCCGGTGAGCTGCTCGTTCAAATGCCAAGGAAGACTGCGAGTTGCAAGATGGAGTAGCATTTATGTACAATTCGAACTAGGAAGGGGTACCCCCAATAAAAAAAAAAGCTCAGAGGCTTAAGAAGACAAAAACTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAACTCCAGCGTGGCGCTCTTACAGAAACAGCACTAGGCCAATAATCTTGCTAAATCTTAAGCACTACACATACTCCAGAGGTTGATCTCTGCCCTTGAAGATTCAGCGATTTCTTTCGAACCAGATTTCTCAAGCAATTAGGATCAACCACGGGTCTCCATACCTATCAACAGTGTCAACTCTGTATTTGGCTCTCCTGCCTATCTACGACGTCAAGTCTCCATGATAATCTCTGCACACCATGGATGATTGATGAGTGAATATATATATGATTCAGCTTCAGAAAAGCACCATCCTCAGGTAGTCCTCGAGGACGGGGAGCCTCTGCTCGCCGTCGTGGCCGTGCATGACGCCGACCATCCTGGCGGCATTGAGCGCCGCCTGCGTGAAGCCGGCGGGGAAGGCCCTCCCGGAGAAGAAGCTCTCACGGTTGAGCTTCTCCCACTCCCTGGCGATCATGCCGCGCATGTGCTCCTCCGCTTCGCTGGCGGCGAGCCCCGGGTTCTCCCTGAGGAGCGCTCCTCTTGTGTGCTGACAAGATCAAAGATGTCATCCATAATGTAGACAAAGGAGGCGATCTTTGTGAGCTCAATCCGGTATCTGGAGAAGGAAGCACCCTGGAAGGCCGTCATTATCCAGACGTACCATTTCTGCACCTGGTCCCTGGCAACTGCTTGTTCAGCTTGAAGTTTGCAAGAGCAAGCTCTTCCATTGCAGTGCACCTGGTGGGCAAGGTCTGCAGGTAGCTGAGGTGGTGCCTGGCCTTGTACTGCATCAAGCTGACATGGTAGGGATGTTCCAGTGACTGCCTCACATATCTTGCAAGGCCTGGCTCTAAGTAATCGATGGCAGATTGAAGGCTGAGTAGCCCTCTGATGTCCTTGCTGTAAGCCATGCTGAAATCGCCATTTCCATCTGTGAATCTTCCAAGAACCTCATCTGCACAGCCGGAACGCGAGGGTGGCATCGAGCAGGTCGCCGCCATGGGCGAGCTCCTCGAGGTGGGCATCCATGGCGCCGTCGACCTCGTCCTGGAAGTAGTGGTCGATGCAGAGGCGCTTCAGGTGGTCGACGGTGGCCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.357549
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0075200.2 10 18575479 T A
Osa10LNT0075200.2 10 18572142 T C
Osa10LNT0075200.2 10 18572184 C T
Osa10LNT0075200.2 10 18572662 A C
Osa10LNT0075200.2 10 18573194 T G
Osa10LNT0075200.2 10 18574244 A G
Osa10LNT0075200.2 10 18574454 A G
Osa10LNT0075200.2 10 18574531 C T
Osa10LNT0075200.2 10 18572623 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0075200.2 osa-miR395w Cleavage 4.5 15.709 1 22
Osa10LNT0075200.2 osa-miR1428a-5p Translation 4.5 15.959 1 21
Osa10LNT0075200.2 osa-miR5495 Translation 5.0 17.203 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0075200.2 10 Rf Physiological trait Sterility nan nan
Osa10LNT0075200.2 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0075200.2 10 nan Physiological trait Sterility C701 C16
Osa10LNT0075200.2 10 qRf-10-2 Physiological trait Sterility RM258 RZ811
Osa10LNT0075200.2 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus