>Osa10LNT0075500.1

GCAAGAAATGCTGAGGCTTGCACAAGTGAACTGTCAGCAACAAAAGCATACATGCATACACTCTCATACAGACCGGAACAAAGTACTATATGATCAATTATCCATCTTCCTTTCTTCAGATTACATAACCCAAACAGGAACAAGTGCAAACTGAATGTCTGTATTGTGCTGCTGAAAGCCTGAAACTGAACCAATTTCCATGCAGATTCCAGTTCTTCCAGCTGCCATTCTCAACTAGTATATCTTCTACCACATCGCATGAAAAATTGCTACCAATTTCAGATATGTACACTCCCAAAAACAACCAAATATGTCTATGTATACAGTATACACAACACATGAACTAATACATAAATATGAACAATCAGTGAGTACTGTCCCAGTTCTCTCAGTCCTCTAAATACAAAAGCCAGCCAGAGGGGAATAGAGGCCTCTAATTATTATAATATTATTATATTAGAGTGTATTTACACATAGTATAAGCAGATATTGAAAAGGAATAGGGCCTGCAATATTATAATGTTATTTTCTCTAAGTACCATATATATAGATAGAGCCACCAAGAGAAACCCAGTTCTCAATTTGCCCAGATTTCAAGGCGGTCAGGGCAGCTACGTTGTGAAACTAGTGGTGGAACAAGGGAAGGTGTCAGGATGGCACCTTCATGCATCTTACTTGCAAGTTGAGAGGATCAAATTGCAACTCTTCGCAGATATCTTGGAGGAACTCTGCCTTCTTTGGGGTCGCAGCCAACTCATTGTTAAAGAATTTAGTAGGTCTGAAATACTCGAGCCTTGACATCTGTGATGATTGCTTCTGCTTCGTACTTCGCCAGTCCAAATATATTCCTCAGTTGATTCAAAGCCGCAAGCTTGTCATCGTTAAGATGTCCATCTGAAAGTACCTCCATTGCATAGGCACTATAGAGCATCTTTAGATCCTCTACCCTCTTTTCATGATCACTGTCTCCACCTAATGTAATAGGCCCAAGCCCGCGGACAAATCTTTCTTCTCCCGGGAAATTGCTCAGTACTGTAAGCATACCATTAAATGAAAGGATGCTTTTCACTTCTTCAACAACCTGTGTTCGGTTATTCAAGTTGTTCAAGGCTGTTGAAATGTTTTCTTCAACTAACTTCTTTGCATGCTCCCTGAACATCTCAGAAGCAATCTCATCAGAAAGTTTATATGCTAGTTGTGATCTCCTTACTTCAATTAATGTGCCTATGTCAAGACCTCTCCCAATAGACTTGAGCAATGATGCATATAAACTCTTGGCACTTTCCCTCATAACATCGTCTATCTGAGATTCATGAACCCCGAAAAGACGTTTCCATGGAAGTAGGTATTCATATGCATCCCGAAACACAAGATTTGTTACAAATATAAGCTTTTCAAATGCCTGCTGTTGTCCTACACCAGCATTGCGATCAATGCGTTTAGCAATCTCCATGTGCACATTTGCAGCATCTATATCATTCAACCCAAGGGCCTTTTTAAACTTTATAATAGTCTCAACTTCAGTACCTTCAAGGTCTTCATATCCTGGATGAATTAATGAGAAAACAAACCTGCCATACAAATCACAGAGCTCGGCCTTGAAGGTTGCATCCTCTGTGCTAACGCCGTATTTGCTCGCGATGGCCTCCACCTCGCTGCTCTCCAGCTTGGTGGGGTCGTCGGAGCCGGCGACGTAGTTGTGCAGCCCCGCCGCGGCGACCCCGGGCACGGCGGAGTTCACCGCCGCGGCGCCCGCGACGCTGACCGCCCCGAGCGCCGCCGCGCCCGCCACCGTCGTGGTCCGCGTGCCCCCCGCGCGGAGCCCGACCACGTACCCCGCCGCCGCCGCCGCGGCCACCACCGCCAGCTCCACCACCGCCCTCGCCACCGGCGGCAGCGCCTCCACCAGCGGCTGCACCCCCGCCAGCTCCCTCCTCCCCCCGAACACCTCCTCCCCCGACGACACCGCCGCGCACACCACCCCCACCCTCCTCCTCCTCCCCCGCAGCGACAGCAGCGACGACGATGCCGCCGCCGCCGCCGCGGCGGCGGCGGCGGCGCGAGGCGAGGGCTTCGCGGAGGCAAGCGAGAGCTCCATTGCTGTGCGCGCGCGCGGCGTGGCGTG

Explanation	CPC Score
noncoding (weak)	-0.373695

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0075500.1	10	18688223	A	C
Osa10LNT0075500.1	10	18689448	T	A
Osa10LNT0075500.1	10	18689463	G	A
Osa10LNT0075500.1	10	18690527	A	G
Osa10LNT0075500.1	10	18690855	T	G
Osa10LNT0075500.1	10	18691171	T	G
Osa10LNT0075500.1	10	18691405	T	A
Osa10LNT0075500.1	10	18691779	T	C
Osa10LNT0075500.1	10	18692472	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0075500.1	osa-miR5531	Cleavage	4.0	19.679	1	22
Osa10LNT0075500.1	osa-miR5796	Translation	4.5	13.524	1	21
Osa10LNT0075500.1	osa-miR395o	Cleavage	4.5	12.813	1	21
Osa10LNT0075500.1	osa-miR815a	Cleavage	4.5	14.681	1	21
Osa10LNT0075500.1	osa-miR815b	Cleavage	4.5	14.681	1	21
Osa10LNT0075500.1	osa-miR815c	Cleavage	4.5	14.681	1	21
Osa10LNT0075500.1	osa-miR396f-3p	Cleavage	5.0	9.647	1	24
Osa10LNT0075500.1	osa-miR2920	Translation	4.5	15.361	1	23
Osa10LNT0075500.1	osa-miR5157a-3p	Translation	4.5	13.425	1	24
Osa10LNT0075500.1	osa-miR5157b-3p	Translation	4.5	13.425	1	24
Osa10LNT0075500.1	osa-miR2275d	Translation	4.0	17.418	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0075500.1	10	Rf	Physiological trait	Sterility	nan	nan
Osa10LNT0075500.1	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386
Osa10LNT0075500.1	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0075500.1	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583
Osa10LNT0075500.1	10	qRf-10-2	Physiological trait	Sterility	RM258	RZ811

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus