\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0005800.1

GGACAGTATTGCAGATTAGAAGCACAGGAAAAACAATGATGGGTACAAAGAAAAAAAATGATGTCGACAGTATCAAATATCACACATTTCACTGTGTGGGAGCACTCAGTTTAAACACATTTTTTGTAACTCAGATACATCACAAACTAAACAGGTTTATGAGTGGAATGAGCTGAGCAGCAGGAGACACTATAATGATGCCCTGACTTTCGTCATGCTGTCTGAAGCAATAAATCTTCAGGAACTTCAGAAAATTACTACCATCAAATAAATTATCTGGAATTTCCCTACCAGTCGATTTCATGGAACTGGAGAGAAGGTGGCGGCCGGAGAAGAGAGCTATGCCGTCGCCGTCGCCGTAGCCGTCGCCTCTGGGTCGCGCCGCGCTCCGCCCCCGCCGTCGCGTCCGTGTCTTCGTAGCGCCGCCGCTCCTCTCGAGGAATTTTTCCGCTCCTCTCGAGTAGGTGAT

Coding Potentia
Explanation CPC Score
noncoding -1.05396
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0005800.1 1 4282426 T C
Osa01LNT0005800.1 1 4282607 G T
Osa01LNT0005800.1 1 4282621 C T
Osa01LNT0005800.1 1 4283335 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0005800.1 osa-miR440 Cleavage 2.5 22.616 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0005800.1 1 nan Morphological trait Root RM7383 RM243
Osa01LNT0005800.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0005800.1 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0005800.1 1 gp1a Morphological trait Panicle/flower RM1 R753
Osa01LNT0005800.1 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0005800.1 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus