>Osa10LNT0076200.1

GGCATCAGTGACATCATATAATTATTCAATGTTTGTACATTCCACAATTGGGTGGCACTCTTCTGAACAACAGTAGACTACAAGGCACACACTGCCTGGAAAGGCAGAAACACGAAAATTGGAGAAATACAAGTTTTCAGTTGGTTAGTATCTGAATCAAGACGACTTTCATTCTTTAATTCTTCCAAGTTCCAATCAGGTGGTTTCGCTTTGTATCCCAATCATAAATTGTTGTAGTGGCCAGCTTGTGCTACTGCAAGCAGCCATTTCAATCTGAACTATGCATCACTCTGGATGAAGTTACTCCTTGAGCAATCTCAATACATCACCAACAAGATGCAGGGAGCCAGTAACTAAGACCTGATATGAAGTAGATTGGTTTTGTTGAGCAGTTTCCCTTAGCCATTTGATTGCCAATGGAAGAGATTCAAAAACAGAACTAGCTGTACTGGAGTTTGAACCATTTAGACCTTTATTGCTATGAAGCAGGCCTTCCCACACTCTTTGAAGTGATAATTGCCATGACAGATCGATTTGCACACGCTCTGAAGGTGGTGATGCATGAGAACCAAGCTTGTTGTATTGAGATTGATTTGGCACAAATAGGGCATGATCAAACTGGAGTCCATTCTGGGCACATGTAGCTAGAAGACATGGAAGCAGTCTTTGAGGATCTCTTACAGACATGCAATTGAACAGGAGAATCTTCCTAGAATTGGTGCCAATATGTAGCTGATCCAAAGGGCCTGGTTGTTGTTCATCCTTTCTTGTAACACAGGAAAACCACTTCGCACAAATTTCCATACTTTCTGGGCTATGTGCTCCATCCAAATAGAAAATTAAGGAACTGCTGTCTTTGGACAGCACTTCCGGATCTGGAACAATCTGTGCTCGTCCTTGCAAACAAGCACTTGACAGCCCTTCGATGAATTGATCTGGCAAGGTAACAGAATGCTTCTTATGTAGTATGTTGAAATGCCCTTGCCTTTGAAGCCAGGTATTAACCAATGCGACTGCAAGGCCAGCATTCATGTATTGGTGTTCACCATGTAGCCCAAGAGGTTGATCATCCAATTGTTGTGGATCCAAAGGCTGGACTACTTGAAGAGGAACACCCAATTCAGAAGCTCTGTGCTTCAGTACAGACATTGCCTCTTCTGGTTGTGGAACTGTATATGCTGGAACTCCTTTCTTTAATATTCCGGCTTTCTCCCCAGCAATTTCTCCTAGCGTATTTCCAAGAATCTCCATGTGATCATATCCAAGGGAAGATATTCCACAAACTACAGGTGCTTTGACCACGTTCGTTGCATCATATTTTCCTCCCAAACCAACCTCAAGCACAGCTACATCCACCTGCTCATCAGAAAATATCTTGAATGCTAGCAGCGCAAGGAATCTAAAATAGGCTGGCATTGGAATATCACCACCAGTCTTATCTTTCAGTTTGTTCCAGCACCACCAGAAATACCTTATAAACTTTTCTTCCGAAATGTCCAACCCGTTAAGCCGAAATCTCTCACGAACATCCATCAAGTGTGGTGAGGTGAACAACCCAGTGCGGAAACCACATGATCGAAGAATTGACTCGGCAAATGTGCATGTTGAACCCTTCCCTTTCGTCCCTGCGACATGAACCACCTTCAACCGCGCGATCGGCTCCTCCAGCTCCAGTATCTGCAGGTACTTGGCCATGAGCTCCCACTGGTTCCCACGGTTGCCGGTGTCCGCCCGCACCTTCTGCGTGATCAGCGACGAGATGCACCCCAGCACCTCCTCGTACTCCGCCGACCCCGCCGCGACTCCTGGCTGCGCGACGCTGGCCATGGCGGCGCGCGGGGTGAGGAGCTGGAAGGGGTGGGACTGCGGCGGCGGCGGCGGGCGCAGGAGAGGGTGGGGAGGGGCGCTGCCGCCGCCGCGGTGGTGGTGGTGGTTGTGGTGGAGGAGGAGGAGGCTGCTGCTGCGGCGGCGGAGGTGGGCGAGGCGAGGGGGCGGCATGGCGACGGAGGAGGAGGGTACTAGTAGCGTGGTGGTGGTGGTGGTGGTGGTGGCGGAGGATGGTGGTGGGCTCGCGGCGCCGCTCGCGCGCATCGTTTTCGTTTTGCCGGATCGTG

Explanation	CPC Score
noncoding (weak)	-0.735255

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0076200.1	10	19205139	A	G
Osa10LNT0076200.1	10	19204327	A	C
Osa10LNT0076200.1	10	19203084	G	C
Osa10LNT0076200.1	10	19201609	C	T
Osa10LNT0076200.1	10	19202009	T	C
Osa10LNT0076200.1	10	19202612	C	T
Osa10LNT0076200.1	10	19202630	A	C
Osa10LNT0076200.1	10	19203080	G	C
Osa10LNT0076200.1	10	19203086	G	C
Osa10LNT0076200.1	10	19203519	G	A
Osa10LNT0076200.1	10	19203880	A	G
Osa10LNT0076200.1	10	19204528	A	G
Osa10LNT0076200.1	10	19205068	C	A
Osa10LNT0076200.1	10	19205411	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0076200.1	osa-miR5807	Cleavage	4.5	15.608	1	24
Osa10LNT0076200.1	osa-miR5822	Translation	4.5	16.6	1	21
Osa10LNT0076200.1	osa-miR1440b	Cleavage	4.5	13.552	1	21
Osa10LNT0076200.1	osa-miR6247	Cleavage	4.5	17.423	1	21
Osa10LNT0076200.1	osa-miR171h	Translation	5.0	17.043	1	21
Osa10LNT0076200.1	osa-miR443	Cleavage	4.5	19.035	1	22
Osa10LNT0076200.1	osa-miR1850.1	Cleavage	5.0	13.372	1	21
Osa10LNT0076200.1	osa-miR1850.1	Translation	4.5	15.631	1	21
Osa10LNT0076200.1	osa-miR5484	Cleavage	5.0	18.275	1	21
Osa10LNT0076200.1	osa-miR2275d	Cleavage	3.5	22.806	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0076200.1	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583
Osa10LNT0076200.1	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0076200.1	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386
Osa10LNT0076200.1	10	qRf-10-2	Physiological trait	Sterility	RM258	RZ811
Osa10LNT0076200.1	10	Rf	Physiological trait	Sterility	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus