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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0076500.1

AATAGGAGTAACTTTCCAATGATTAGTTTAAAAATACATCATGGATCAAGCTAGATTACCACTACGACGCCACACAAACACCACCCTTTTTTGTCCATCGGACACTTGTAAACAGTAAACCTCACCAAACTTGGTACATTTGTTTTTCTGCATCCTTTGGCAGCTGACCAACAAAACTAAGCATCCCCACGACGTCACCTTTTTATTTACTGTAGAATTATCTGACTAGACTGGAATATGAGATTTCTCATTTCTTTACAAGACAACCCAGAATAATGCTAAGTAGCCCAATCACCAGTACGAATGCCAGCGAGAAGCCTCCTTGATGTTGACTGGCTTGACGCCTTGCAAGCTCCAGCTCCTCTCGAAGTTTCCTATTTTGCTCAAGTGCAGACTTCTTTTCTTCGGTCAATTTTGCAACCAAAGCGGACAGCTCGAGGTATTGTTCATCAGGTCCTGCATGTACTCTTGTTTCAACAACAGGACTTGCAGTCTTCAGCATATCCTCATTTCTCACAAATCGTCCAAGAGGTGATCCCAACTCTGTCCCCATCTCAGCTGATCTCAATGAGACATTACCACTTGACAGCTCCGAACCACTCCTCCCATTATCCAAAATCCGCTGCATAGGCACCAAAATTCTCTTTGGAATATCAGACTCCTCTGCAATCTCCATCGCTGGTTCAGGTGGCATCACATAAGAAACCTTAAGCTTCACCTCCTCAACCATGTTGTTCTCATCTCTCAGGAACATTTGAGAGGTGATGTCCTTAGCTGACAAGCCATCGTCGACGACCACGCTCTGCACCAAGAACTTGTCCTTGCACTGCAAGTCCGGAGGCGCCACAATCTGCGCTTGCATCGTGACTACAACGACGGAGGCGGATCGCGGCCGCACGACGCCATTATTGGGGCGCACGCAGTACTTCTTGGGGCTCGTCGTCTTAACCTTAAACGCGACCGTCCTCTCGGTCTTGTTGGCGATCCTGAGGGGGCAGGAGATCTGCTTGTCGAGCTCGAAGGGGAACTGGAGCTCGGGGGGATCGACGTCGACGAGGTCGCAGGAGGCGGCCAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.847446
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0076500.1 10 19416158 C A
Osa10LNT0076500.1 10 19418399 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0076500.1 osa-miR160a-3p Translation 4.5 18.174 1 21
Osa10LNT0076500.1 osa-miR160b-3p Translation 4.5 18.174 1 21
Osa10LNT0076500.1 osa-miR160e-3p Cleavage 4.5 18.174 1 21
Osa10LNT0076500.1 osa-miR166i-5p Cleavage 4.5 8.446 1 21
Osa10LNT0076500.1 osa-miR171i-5p Translation 5.0 20.769 1 21
Osa10LNT0076500.1 osa-miR2095-5p Cleavage 4.0 11.045 1 22
Osa10LNT0076500.1 osa-miR2926 Cleavage 4.5 16.828 1 20
Osa10LNT0076500.1 osa-miR5523 Cleavage 5.0 14.156 1 22
Osa10LNT0076500.1 osa-miR1858b Cleavage 4.5 14.308 1 21
Osa10LNT0076500.1 osa-miR1858a Cleavage 4.5 14.308 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0076500.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0076500.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0076500.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0076500.1 10 qRf-10-2 Physiological trait Sterility RM258 RZ811
Osa10LNT0076500.1 10 Rf5 Physiological trait Sterility nan nan
Osa10LNT0076500.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0076500.1 10 Rf-1 Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus